Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.9e-51 205.7 114 100.0
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.1e-46 188.0 105 99.0
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 7.3e-27 124.0 89 77.5
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 6.2e-26 120.9 89 74.2
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 1.8e-25 119.4 89 73.0
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 3.8e-23 111.7 89 68.5
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 4.2e-22 108.2 89 71.9
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 4.2e-22 108.2 89 67.4
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.2e-21 106.7 89 71.9
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 1.2e-21 106.7 89 71.9
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 1.6e-21 106.3 89 67.4
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.6e-21 106.3 89 67.4
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 1.6e-21 106.3 87 70.1
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 2.1e-21 105.9 89 67.4
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 3.5e-21 105.1 89 65.2
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 4.6e-21 104.8 89 65.2
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 4.6e-21 104.8 89 65.2
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 4.6e-21 104.8 85 72.9
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 4.6e-21 104.8 89 65.2
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.0e-21 104.4 87 66.7
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.8e-21 104.0 89 65.2
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.0e-20 103.6 89 69.7
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.3e-20 103.2 87 65.5
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 3.0e-20 102.1 89 68.5
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.0e-20 102.1 85 70.6
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 3.9e-20 101.7 89 67.4
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.6e-20 100.9 89 65.2
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 8.7e-20 100.5 87 66.7
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 1.9e-19 99.4 90 65.6
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 2.5e-19 99.0 89 62.9
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 2.5e-19 99.0 85 68.2
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 3.3e-19 98.6 81 72.8
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 1.6e-18 96.3 89 64.0
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 2.1e-18 95.9 81 71.6
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 2.8e-18 95.5 81 67.9
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.8e-18 95.5 80 71.2
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 3.6e-18 95.1 89 60.7
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 4.8e-18 94.7 79 70.9
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 4.8e-18 94.7 79 70.9
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 4.8e-18 94.7 81 70.4
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 6.2e-18 94.4 78 70.5
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 6.2e-18 94.4 78 71.8
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 8.1e-18 94.0 81 69.1
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 8.1e-18 94.0 81 69.1
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 8.1e-18 94.0 88 58.0
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 1.1e-17 93.6 80 68.8
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 1.4e-17 93.2 81 67.9
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 1.8e-17 92.8 81 67.9
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 1.8e-17 92.8 81 69.1
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 1.8e-17 92.8 79 68.4
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 2.4e-17 92.4 81 66.7
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 2.4e-17 92.4 89 64.0
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 2.4e-17 92.4 81 66.7
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 2.4e-17 92.4 85 64.7
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 3.1e-17 92.0 81 67.9
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.0e-17 91.7 79 68.4
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.0e-17 91.7 79 68.4
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 6.9e-17 90.9 83 63.9
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 6.9e-17 90.9 89 64.0
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 6.9e-17 90.9 80 66.2
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 9.0e-17 90.5 87 59.8
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 9.0e-17 90.5 79 67.1
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.2e-16 90.1 89 64.0
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 1.5e-16 89.7 89 61.8
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 1.5e-16 89.7 83 63.9
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.5e-16 89.7 81 64.2
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 2.0e-16 89.4 80 67.5
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 2.0e-16 89.4 80 67.5
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 2.0e-16 89.4 80 67.5
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 2.0e-16 89.4 87 62.1
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 2.0e-16 89.4 79 68.4
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 2.0e-16 89.4 78 67.9
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 2.6e-16 89.0 89 62.9
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 3.4e-16 88.6 89 60.7
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 3.4e-16 88.6 89 60.7
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 3.4e-16 88.6 89 60.7
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 3.4e-16 88.6 89 60.7
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 4.5e-16 88.2 83 63.9
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 4.5e-16 88.2 83 63.9
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 4.5e-16 88.2 83 63.9
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 5.8e-16 87.8 80 66.2
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 5.8e-16 87.8 89 57.3
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 7.6e-16 87.4 80 62.5
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 7.6e-16 87.4 80 62.5
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 9.9e-16 87.0 85 60.0
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.3e-15 86.7 79 64.6
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 1.7e-15 86.3 81 60.5
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.2e-15 85.9 79 64.6
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.2e-15 85.9 79 64.6
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.2e-15 85.9 89 57.3
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 2.9e-15 85.5 89 57.3
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 2.9e-15 85.5 79 63.3
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 4.9e-15 84.7 89 56.2
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 6.4e-15 84.3 80 61.2
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 8.4e-15 84.0 81 60.5
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 8.4e-15 84.0 89 58.4
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 1.1e-14 83.6 89 57.3
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 1.4e-14 83.2 79 60.8
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.9e-14 82.8 89 60.7
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 2.4e-14 82.4 89 60.7
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 2.4e-14 82.4 83 62.7
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 2.4e-14 82.4 87 59.8
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 3.2e-14 82.0 81 59.3
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 4.2e-14 81.6 77 62.3
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 7.1e-14 80.9 77 62.3
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 9.3e-14 80.5 78 62.8
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.6e-13 79.7 81 56.8
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 2.1e-13 79.3 83 55.4
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 2.1e-13 79.3 81 59.3
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 2.7e-13 79.0 68 66.2
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 4.6e-13 78.2 80 57.5
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 4.6e-13 78.2 79 63.3
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 7.9e-13 77.4 74 62.2
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 7.9e-13 77.4 80 60.0
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 1.8e-12 76.3 81 60.5
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 3.0e-12 75.5 87 56.3
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 3.9e-12 75.1 87 57.5
vmacro20986 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 5.1e-12 74.7 77 53.2
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 6.7e-12 74.3 89 52.8
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 6.7e-12 74.3 71 63.4
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 6.7e-12 74.3 89 52.8
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 8.7e-12 73.9 89 55.1
COL.COLO4_17204 Corchorus olitorius HOM05D003466 ORTHO05D004102 3.3e-11 72.0 92 56.5
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 4.3e-11 71.6 89 52.8
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 9.6e-11 70.5 86 54.7
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 9.6e-11 70.5 80 51.2
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 1.6e-10 69.7 87 54.0
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 2.8e-10 68.9 87 51.7
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 4.8e-10 68.2 83 54.2
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 8.1e-10 67.4 87 50.6
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 1.8e-09 66.2 81 51.9
Os06g0335101 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 1.8e-09 66.2 89 46.1
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 2.4e-09 65.9 89 51.7
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 2.4e-09 65.9 89 51.7
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.4e-09 65.9 80 50.0
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.4e-09 65.9 80 50.0
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 3.1e-09 65.5 80 56.2
Rhsim07G0176000 Rhododendron simsii HOM05D003466 ORTHO05D004102 4.0e-09 65.1 83 47.0
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 9.0e-09 63.9 83 50.6
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 3.4e-08 62.0 85 50.6
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 2.2e-07 59.3 89 49.4
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 2.2e-07 59.3 89 49.4
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 2.2e-07 59.3 81 53.1
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 4.9e-07 58.2 90 45.6
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 8.4e-07 57.4 89 47.2
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 1.4e-06 56.6 81 49.4
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 5.5e-06 54.7 89 44.9
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 5.5e-06 54.7 81 46.9


User provided reference genes

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