Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.1e-57 226.5 120 100.0
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.8e-42 174.9 123 69.9
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 3.0e-39 165.2 122 65.6
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-39 164.9 120 65.0
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 8.8e-39 163.7 115 66.1
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 5.7e-38 161.0 120 64.2
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 9.7e-38 160.2 123 63.4
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.7e-37 159.5 123 63.4
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-37 159.1 123 63.4
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-36 155.6 122 63.1
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 2.4e-36 155.6 122 63.1
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 2.0e-30 136.0 117 61.5
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 7.4e-30 134.0 122 55.7
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-29 132.5 122 54.9
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 4.8e-29 131.3 117 55.6
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 6.3e-29 131.0 123 53.7
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-28 130.2 118 54.2
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.4e-28 129.8 118 54.2
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 9.1e-28 127.1 108 59.3
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 9.1e-28 127.1 108 59.3
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.1e-28 127.1 120 62.5
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-27 126.3 103 60.2
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.6e-27 126.3 128 50.8
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-27 125.9 102 60.8
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-27 125.6 122 58.2
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 5.9e-27 124.4 127 48.8
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-26 123.6 122 58.2
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.3e-26 123.2 122 50.8
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 2.2e-26 122.5 125 51.2
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 2.9e-26 122.1 118 57.6
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 5.5e-25 117.9 102 57.8
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.2e-24 116.7 122 48.4
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.6e-24 115.2 118 48.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 5.7e-22 107.8 120 54.2
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 9.7e-22 107.1 66 71.2
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 8.3e-21 104.0 99 58.6
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.1e-20 101.7 122 45.1
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.1e-20 100.5 125 44.8
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 1.6e-19 99.8 128 43.8
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 5.9e-19 97.8 121 47.1
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-18 97.1 118 44.1
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.5e-18 94.0 122 41.0
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-17 93.2 124 44.4
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.5e-17 92.4 117 44.4
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.2e-17 90.9 101 46.5
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 9.4e-17 90.5 125 44.8
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.2e-16 90.1 120 43.3
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 2.1e-16 89.4 121 42.1
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 3.6e-16 88.6 124 45.2
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-16 87.4 121 42.1
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-15 86.3 121 41.3
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-15 86.3 121 41.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 1.8e-15 86.3 121 41.3
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 8.8e-15 84.0 121 42.1
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 8.8e-15 84.0 121 42.1
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.5e-14 83.2 96 42.7
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 2.0e-14 82.8 121 42.1
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 5.7e-14 81.3 121 41.3
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 7.5e-14 80.9 118 39.8
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 2.8e-13 79.0 50 68.0
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 6.3e-13 77.8 115 36.5
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 8.3e-13 77.4 119 37.8
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 8.3e-13 77.4 119 37.8
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-12 77.0 121 38.8
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-12 77.0 121 38.8
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.1e-12 77.0 121 37.2
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 1.4e-12 76.6 114 39.5
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-12 76.3 148 34.5
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 1.8e-12 76.3 148 34.5
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 3.1e-12 75.5 115 35.7
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 9.1e-12 73.9 121 37.2
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 9.1e-12 73.9 121 37.2
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-11 72.8 119 36.1
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-11 72.8 119 36.1
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 5.9e-11 71.2 137 37.2
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 2.3e-10 69.3 119 36.1
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 3.8e-10 68.6 113 37.2
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-09 67.0 115 33.9
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-09 66.6 108 37.0
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.9e-09 66.2 120 35.8
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.5e-09 65.9 115 33.9
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 3.3e-09 65.5 118 35.6
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 3.3e-09 65.5 124 33.1
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 4.2e-09 65.1 121 33.1
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 4.2e-09 65.1 120 39.2
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 9.5e-09 63.9 98 37.8
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 9.5e-09 63.9 116 30.2
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.6e-08 63.2 114 36.0
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-08 62.8 98 36.7
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 2.8e-08 62.4 122 30.3
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 3.6e-08 62.0 98 37.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.6e-08 62.0 118 31.4
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.6e-08 62.0 105 33.3
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 6.1e-08 61.2 98 37.8
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 6.1e-08 61.2 115 32.2
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 8.0e-08 60.8 115 31.3
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.8e-07 59.7 125 30.4
A07p23300 Brassica napus HOM05D017967 ORTHO05D003038 2.3e-07 59.3 122 29.5
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.3e-07 59.3 110 33.6
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.3e-07 59.3 125 30.4
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 2.3e-07 59.3 118 32.2
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.0e-07 58.9 110 34.5
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 3.0e-07 58.9 118 32.2
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 4.0e-07 58.5 115 33.0
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 4.0e-07 58.5 115 30.4
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 4.0e-07 58.5 118 32.2
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 5.2e-07 58.2 120 30.8
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 5.2e-07 58.2 129 31.0
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 5.2e-07 58.2 129 31.0
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 6.8e-07 57.8 129 31.0
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 6.8e-07 57.8 41 58.5
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 6.8e-07 57.8 110 33.6
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 8.9e-07 57.4 115 31.3
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 8.9e-07 57.4 51 47.1
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 8.9e-07 57.4 51 47.1
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.2e-06 57.0 56 46.4
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.2e-06 57.0 114 33.3
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.5e-06 56.6 119 30.3
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-06 56.6 52 53.8
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.5e-06 56.6 99 33.3
C06p24420 Brassica napus HOM05D017967 ORTHO05D003038 2.0e-06 56.2 122 27.9
BolC6t37589H Brassica oleracea HOM05D017967 ORTHO05D003038 2.0e-06 56.2 122 27.9
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 2.0e-06 56.2 41 51.2
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.6e-06 55.8 123 33.3
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.4e-06 55.1 117 32.5
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.4e-06 55.1 115 30.4
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 4.4e-06 55.1 122 28.7
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 4.4e-06 55.1 99 32.3
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 4.4e-06 55.1 39 51.3
THA.LOC104818205 Tarenaya hassleriana HOM05D005672 ORTHO05D003038 4.4e-06 55.1 116 25.0
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 4.4e-06 55.1 111 33.3
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.7e-06 54.7 104 33.7
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 5.7e-06 54.7 117 32.5
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 5.7e-06 54.7 120 30.8
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 7.5e-06 54.3 117 32.5
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 7.5e-06 54.3 122 29.5
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 7.5e-06 54.3 120 30.8
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 7.5e-06 54.3 111 31.5
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 9.8e-06 53.9 101 31.7
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 9.8e-06 53.9 118 30.5
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 9.8e-06 53.9 41 48.8
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 9.8e-06 53.9 120 29.2
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 9.8e-06 53.9 108 33.3


User provided reference genes

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