Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.2e-67 260.0 160 100.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.0e-55 218.4 160 81.2
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.0e-54 216.1 160 76.9
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 3.7e-53 211.8 163 82.2
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.9e-53 211.5 160 82.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 9.2e-52 207.2 160 78.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.1e-50 201.4 161 75.8
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.3e-49 198.4 160 77.5
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 5.8e-46 188.0 118 82.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.9e-45 185.7 160 78.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 3.2e-44 182.2 161 76.4
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-41 173.3 113 85.0
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-38 161.8 118 75.4
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 9.9e-38 160.6 118 75.4
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-37 159.5 118 74.6
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.9e-37 159.1 162 71.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.1e-35 152.9 180 57.8
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.6e-35 151.8 120 85.8
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 7.8e-35 151.0 126 68.3
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-34 150.6 182 57.1
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.3e-33 145.6 183 57.4
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.3e-33 145.2 178 55.1
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.3e-33 145.2 178 55.1
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.3e-33 145.2 178 55.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 7.3e-33 144.4 174 60.9
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.6e-33 144.1 184 53.8
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-32 142.9 178 58.4
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-32 142.9 183 56.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.1e-32 142.9 181 58.0
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-31 140.2 151 57.6
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.9e-31 137.9 200 51.5
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.0e-30 136.3 206 51.0
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 5.8e-30 134.8 170 57.1
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 5.8e-30 134.8 170 57.1
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 9.9e-30 134.0 179 55.3
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.2e-29 132.9 188 53.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 8.4e-29 131.0 175 53.7
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.9e-28 129.8 188 56.4
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.6e-19 100.1 131 48.9
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.7e-19 99.4 155 49.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.5e-19 99.0 155 43.9
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 4.6e-19 98.6 147 51.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.0e-19 98.2 147 46.9
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 6.0e-19 98.2 133 48.1
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.0e-18 97.4 134 47.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.0e-18 97.4 134 47.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.3e-18 97.1 155 47.1
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.8e-18 96.7 124 46.0
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.8e-18 96.7 147 40.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 2.3e-18 96.3 143 51.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.3e-18 96.3 133 45.1
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.9e-18 95.5 141 56.7
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.9e-18 95.5 135 44.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.7e-18 94.7 133 44.4
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.7e-18 94.7 190 42.1
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 6.7e-18 94.7 150 41.3
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 8.7e-18 94.4 158 41.8
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.1e-17 94.0 138 44.2
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.1e-17 94.0 135 44.4
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.3e-17 92.4 133 46.6
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 7.4e-17 91.3 160 46.9
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 7.4e-17 91.3 148 41.9
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 7.4e-17 91.3 148 41.9
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.3e-16 90.5 116 47.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.3e-16 90.5 141 51.1
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.6e-16 90.1 137 43.1
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-16 90.1 123 44.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.1e-16 89.7 143 51.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.7e-16 89.0 90 57.8
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 4.8e-16 88.6 140 45.7
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 6.2e-16 88.2 112 63.4
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 6.2e-16 88.2 105 51.4
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 6.2e-16 88.2 134 46.3
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-15 87.4 135 45.9
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.1e-15 87.4 148 45.3
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.1e-15 87.4 134 43.3
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.4e-15 87.0 127 56.7
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.4e-15 87.0 141 52.5
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.8e-15 86.7 162 40.7
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.4e-15 86.3 77 59.7
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 4.0e-15 85.5 123 43.1
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 9.0e-15 84.3 133 42.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 2.0e-14 83.2 138 49.3
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.4e-14 82.4 135 42.2
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.4e-14 82.4 125 41.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.4e-14 82.4 160 39.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.8e-14 81.6 77 57.1
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.8e-14 81.6 161 36.0
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 5.8e-14 81.6 158 50.0
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 5.8e-14 81.6 142 48.6
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.0e-13 80.9 118 44.1
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.0e-13 80.9 172 40.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-13 80.5 128 51.6
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.7e-13 80.1 90 53.3
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 2.9e-13 79.3 124 46.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.8e-13 79.0 159 40.9
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.8e-13 79.0 129 46.5
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 3.8e-13 79.0 143 39.9
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 4.9e-13 78.6 172 37.8
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 6.5e-13 78.2 88 50.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 8.4e-13 77.8 163 38.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 8.4e-13 77.8 124 43.5
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-12 77.4 157 39.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-12 77.4 166 43.4
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.1e-12 77.4 139 40.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.1e-12 77.4 139 40.3
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.4e-12 77.0 98 49.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.5e-12 76.3 103 48.5
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 4.2e-12 75.5 142 43.7
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.1e-12 74.7 107 40.2
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 7.1e-12 74.7 160 40.0
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 9.3e-12 74.3 76 51.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 9.3e-12 74.3 129 41.9
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.3e-12 74.3 150 39.3
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.2e-11 73.9 137 40.1
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.6e-11 73.6 85 50.6
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.6e-11 73.6 155 40.0
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.6e-11 73.6 78 48.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.1e-11 73.2 98 46.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.1e-11 73.2 127 41.7
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.1e-11 73.2 153 38.6
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.1e-11 73.2 150 36.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.7e-11 72.8 71 52.1
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.7e-11 72.8 92 53.3
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.5e-11 72.4 72 55.6
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.1e-11 71.6 161 36.6
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 7.9e-11 71.2 75 49.3
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.9e-11 71.2 126 42.9
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 7.9e-11 71.2 148 35.1
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.0e-10 70.9 98 45.9
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.3e-10 70.5 96 46.9
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-10 70.5 114 40.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.3e-10 69.7 110 45.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.3e-10 69.7 100 41.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.3e-10 69.7 142 42.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.3e-10 69.7 144 35.4
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.0e-10 69.3 180 42.8
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 3.9e-10 68.9 88 47.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 3.9e-10 68.9 71 54.9
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 3.9e-10 68.9 71 54.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.1e-10 68.6 100 48.0
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.1e-10 68.6 128 42.2
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.1e-10 68.6 88 45.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.1e-10 68.6 105 48.6
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 6.7e-10 68.2 78 48.7
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.7e-10 67.8 67 55.2
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.9e-09 66.6 119 42.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 2.5e-09 66.2 79 51.9
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.3e-09 65.5 82 42.7
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 4.3e-09 65.5 128 38.3
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 7.4e-09 64.7 75 52.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 9.7e-09 64.3 81 48.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.6e-08 63.5 128 42.2
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.8e-08 62.8 96 42.7
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.7e-08 62.4 77 44.2
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 3.7e-08 62.4 93 45.2
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 6.3e-08 61.6 88 47.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.4e-07 60.5 98 38.8
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.4e-07 60.5 99 44.4
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.4e-07 60.5 80 50.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.4e-07 59.7 74 47.3
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 3.1e-07 59.3 88 43.2
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 4.1e-07 58.9 73 47.9
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.3e-07 58.5 89 44.9
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 1.5e-06 57.0 132 45.5
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.6e-06 56.2 132 46.2
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.6e-06 56.2 82 45.1
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.4e-06 55.8 101 40.6
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 5.9e-06 55.1 95 37.9


User provided reference genes

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