Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.6e-95 352.8 184 100.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 3.3e-85 318.5 184 88.6
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 2.1e-84 315.8 184 88.0
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.6e-84 315.1 184 88.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 6.8e-83 310.8 179 88.3
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 6.8e-83 310.8 179 88.3
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 5.4e-80 301.2 184 87.0
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 2.1e-76 289.3 184 83.2
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 8.1e-76 287.3 168 85.7
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.6e-74 282.3 190 78.4
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 5.4e-72 274.6 184 75.5
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 7.1e-72 274.2 181 75.7
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.1e-71 272.7 184 75.0
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.6e-71 271.6 184 74.5
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.8e-71 270.8 184 73.9
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 7.8e-71 270.8 184 74.5
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 7.8e-71 270.8 184 74.5
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 7.8e-71 270.8 184 73.4
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-70 270.0 184 74.5
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-70 270.0 184 74.5
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.3e-70 269.2 184 75.5
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 8.6e-70 267.3 184 73.9
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.1e-69 266.9 185 74.1
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.1e-67 258.8 211 66.4
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.8e-65 251.9 213 63.8
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-64 250.4 173 73.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.2e-63 246.9 181 68.0
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.6e-63 246.5 181 69.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.3e-62 243.4 181 69.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.3e-62 243.4 180 69.4
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.3e-62 243.4 174 69.5
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.7e-62 243.0 178 69.1
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.0e-62 242.3 171 71.9
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.0e-62 242.3 181 66.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 3.9e-62 241.9 181 66.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 5.1e-62 241.5 171 72.5
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 6.6e-62 241.1 181 68.0
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.1e-61 240.4 174 70.1
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.1e-61 240.4 174 70.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.1e-61 240.4 178 66.9
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.5e-61 240.0 178 67.4
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.9e-61 239.6 182 68.7
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.9e-61 239.6 178 66.9
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.5e-61 239.2 174 70.1
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.5e-61 239.2 181 66.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 3.3e-61 238.8 182 64.8
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 3.3e-61 238.8 177 67.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 3.3e-61 238.8 169 71.0
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 4.3e-61 238.4 159 76.1
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 4.3e-61 238.4 130 94.6
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 5.6e-61 238.0 171 69.0
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 7.3e-61 237.7 184 68.5
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 9.6e-61 237.3 181 66.9
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.3e-60 236.9 183 67.2
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.6e-60 236.5 179 67.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.6e-60 236.5 159 74.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 2.8e-60 235.7 181 66.9
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.6e-60 235.3 179 65.9
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 3.6e-60 235.3 179 65.9
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.6e-60 235.3 160 73.8
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 3.6e-60 235.3 159 73.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 4.8e-60 235.0 202 62.9
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 4.8e-60 235.0 157 73.9
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 6.2e-60 234.6 155 73.5
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 8.1e-60 234.2 159 73.6
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.1e-59 233.8 172 71.5
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.1e-59 233.8 130 91.5
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.1e-59 233.8 171 69.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 4.0e-59 231.9 169 68.6
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 4.0e-59 231.9 172 68.6
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 4.0e-59 231.9 182 63.2
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 5.3e-59 231.5 158 70.9
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.3e-59 231.5 168 69.6
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 6.9e-59 231.1 177 64.4
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 9.0e-59 230.7 164 72.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.2e-58 230.3 130 89.2
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.5e-58 229.9 161 70.8
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.5e-58 229.9 175 69.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.5e-58 229.9 170 68.8
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 2.0e-58 229.6 171 68.4
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.0e-58 229.6 181 63.0
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.6e-58 229.2 182 64.8
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 3.4e-58 228.8 178 65.2
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.4e-58 228.8 171 66.7
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 5.8e-58 228.0 184 64.1
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.7e-57 226.5 180 63.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.2e-57 226.1 177 66.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.2e-57 226.1 181 64.6
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 3.8e-57 225.3 179 65.9
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.8e-57 225.3 194 61.9
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 8.4e-57 224.2 165 67.9
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.1e-56 223.8 206 60.7
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.1e-56 223.8 177 63.8
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.9e-56 223.0 167 67.1
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 2.4e-56 222.6 151 72.2
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.2e-55 220.3 166 69.9
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 3.5e-55 218.8 178 61.8
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.0e-55 218.0 179 64.8
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 6.0e-55 218.0 172 64.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 7.9e-55 217.6 179 62.6
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.0e-54 217.2 177 63.3
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.3e-54 216.9 167 67.1
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.3e-54 216.9 170 65.3
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.3e-54 216.9 173 63.0
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.7e-54 216.5 175 62.3
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.3e-54 216.1 164 67.7
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.3e-54 216.1 154 70.8
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 3.0e-54 215.7 174 61.5
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.0e-54 215.7 164 67.1
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.0e-54 215.7 164 67.1
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 3.0e-54 215.7 181 60.8
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 3.9e-54 215.3 175 62.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 5.1e-54 214.9 177 62.7
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 8.7e-54 214.2 165 60.0
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 8.7e-54 214.2 175 61.7
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.5e-53 213.4 173 63.6
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.8e-52 209.1 173 61.8
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 8.1e-52 207.6 175 63.4
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 8.1e-52 207.6 181 56.9
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 5.3e-51 204.9 158 69.6
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 6.9e-51 204.5 171 62.6
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 9.0e-51 204.1 171 62.6
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 9.0e-51 204.1 176 59.7
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.2e-50 203.8 219 53.4
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.5e-50 203.4 173 63.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 4.5e-50 201.8 174 58.6
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 5.8e-50 201.4 130 78.5
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 9.9e-50 200.7 166 58.4
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-49 199.9 174 58.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.7e-49 199.9 171 61.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 2.9e-49 199.1 157 66.2
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.1e-48 197.2 167 57.5
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.9e-48 196.4 171 57.9
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 6.0e-47 191.4 129 75.2
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 3.9e-46 188.7 122 77.0
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 5.1e-46 188.3 148 68.9
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.9e-45 186.4 119 77.3
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 4.3e-45 185.3 130 67.7
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.4e-42 175.6 151 54.3
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.2e-40 168.7 121 67.8
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 5.5e-40 168.3 118 67.8
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-39 167.2 122 70.5
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-39 167.2 155 54.2
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.6e-39 166.8 135 65.9
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 3.5e-39 165.6 144 54.9
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.3e-37 158.7 148 54.1
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.7e-36 155.6 148 51.4
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 4.8e-36 155.2 150 50.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-35 153.3 96 80.2
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.8e-35 153.3 151 51.0
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 4.1e-35 152.1 131 59.5
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 4.5e-34 148.7 130 56.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.2e-32 142.5 160 48.1
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.5e-29 133.7 117 60.7
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.2e-24 115.9 87 64.4
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.0e-21 106.7 128 50.0
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.2e-20 103.2 175 39.4
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 2.9e-17 92.8 86 58.1
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 3.0e-14 82.8 88 45.5
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 6.5e-09 65.1 46 60.9
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.1e-07 60.1 44 65.9
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 3.6e-07 59.3 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 3.6e-07 59.3 46 69.6
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.8e-06 57.0 46 65.2
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.3e-06 56.6 47 66.0


User provided reference genes

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