Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 5.2e-97 357.8 197 100.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 4.0e-73 278.5 205 75.6
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 4.0e-73 278.5 205 75.6
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 2.4e-70 269.2 206 72.3
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 3.2e-70 268.9 205 75.1
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 7.1e-70 267.7 205 74.1
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 1.6e-69 266.5 202 73.8
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 2.1e-69 266.2 205 73.7
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.0e-68 263.8 205 72.7
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 6.6e-68 261.2 202 71.8
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 7.3e-67 257.7 202 71.3
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 6.2e-66 254.6 199 69.8
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 1.7e-60 236.5 200 69.5
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 3.6e-58 228.8 207 66.7
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 5.8e-56 221.5 204 64.2
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 6.4e-55 218.0 204 64.2
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 8.4e-55 217.6 201 64.7
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 1.9e-54 216.5 201 62.7
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 9.0e-49 197.6 213 53.5
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 5.8e-48 194.9 202 59.4
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 2.9e-23 112.8 156 41.7
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.2e-22 109.4 177 38.4
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 9.4e-22 107.8 181 38.7
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.2e-21 107.5 192 37.0
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.1e-21 106.7 158 40.5
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 3.6e-21 105.9 159 39.6
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 4.7e-21 105.5 177 37.9
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 6.1e-21 105.1 162 41.4
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 6.1e-21 105.1 204 33.3
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 6.1e-21 105.1 180 38.9
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 1.8e-20 103.6 156 38.5
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 3.0e-20 102.8 197 36.0
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 3.9e-20 102.4 195 34.4
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 3.9e-20 102.4 204 34.3
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 8.8e-20 101.3 195 36.4
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.5e-19 100.5 187 35.8
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.4e-19 99.0 188 35.1
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 7.4e-19 98.2 188 34.0
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 7.4e-19 98.2 188 37.2
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 9.7e-19 97.8 160 40.0
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 1.3e-18 97.4 197 33.0
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.3e-18 97.4 178 38.8
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.7e-18 97.1 193 36.8
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.1e-17 94.4 154 38.3
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 2.4e-17 93.2 190 37.4
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 3.1e-17 92.8 155 39.4
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 4.1e-17 92.4 200 34.5
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 5.3e-17 92.0 158 41.8
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 1.2e-16 90.9 179 33.5
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.5e-16 90.5 151 41.1
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 2.0e-16 90.1 208 32.2
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.3e-15 87.4 160 38.1
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.7e-15 87.0 160 32.5
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.2e-15 86.7 160 33.1
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 3.8e-15 85.9 199 32.7
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 8.5e-15 84.7 163 33.1
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 8.5e-15 84.7 160 32.5
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 8.5e-15 84.7 162 36.4
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.5e-14 84.0 175 32.6
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.5e-14 84.0 177 33.9
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 1.9e-14 83.6 197 33.5
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.9e-14 83.6 164 38.4
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.2e-14 82.4 176 32.4
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 5.5e-14 82.0 177 32.2
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 5.5e-14 82.0 186 29.0
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 9.4e-14 81.3 193 32.6
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 9.4e-14 81.3 187 31.6
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 9.4e-14 81.3 167 34.1
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.2e-13 80.9 187 30.5
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.6e-13 80.5 187 34.2
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 1.6e-13 80.5 208 32.7
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 2.1e-13 80.1 159 34.0
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 3.6e-13 79.3 132 36.4
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.6e-13 79.3 215 30.7
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 1.4e-12 77.4 171 31.6
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 1.4e-12 77.4 159 34.6
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.4e-12 77.4 142 37.3
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 2.3e-12 76.6 160 36.2
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 3.9e-12 75.9 170 29.4
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 3.9e-12 75.9 198 30.8
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 5.2e-12 75.5 195 30.8
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 8.8e-12 74.7 180 35.6
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 8.8e-12 74.7 189 31.7
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 8.8e-12 74.7 193 31.6
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.1e-11 74.3 66 51.5
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.1e-11 74.3 172 33.1
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.1e-11 74.3 126 33.3
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 1.5e-11 73.9 171 30.4
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.0e-11 73.6 126 33.3
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 3.3e-11 72.8 151 33.1
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 3.3e-11 72.8 116 39.7
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 5.7e-11 72.0 215 29.3
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 7.4e-11 71.6 69 46.4
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 7.4e-11 71.6 196 31.6
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 9.7e-11 71.2 145 33.8
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 3.7e-10 69.3 92 44.6
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.3e-10 68.6 95 40.0
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.3e-10 68.6 95 40.0
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 8.2e-10 68.2 186 32.3
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 8.2e-10 68.2 165 30.3
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 8.2e-10 68.2 119 34.5
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 2.4e-09 66.6 109 33.9
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 3.1e-09 66.2 166 27.1
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 5.3e-09 65.5 126 38.1
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.3e-09 65.5 63 44.4
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 5.3e-09 65.5 147 29.9
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.2e-08 64.3 76 38.2
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.3e-07 60.8 63 44.4
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 2.2e-07 60.1 77 35.1
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 2.9e-07 59.7 145 33.1
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 6.5e-07 58.5 57 49.1


User provided reference genes

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