Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 7.0e-113 410.6 204 100.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.5e-94 349.7 204 86.3
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.4e-92 343.2 204 83.8
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.6e-85 319.7 206 80.6
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 4.4e-83 311.6 204 79.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 5.8e-83 311.2 208 78.4
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 4.1e-81 305.1 199 80.4
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 4.1e-81 305.1 199 80.4
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 4.1e-81 305.1 199 80.4
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-80 303.5 204 76.0
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.2e-80 303.5 204 76.0
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.6e-80 303.1 204 76.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.1e-76 288.9 209 75.1
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 7.1e-73 277.7 204 73.0
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 7.1e-73 277.7 204 73.0
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.8e-69 265.8 207 70.0
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.3e-62 241.9 209 64.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.5e-59 231.9 207 65.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.1e-57 227.3 223 63.2
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.1e-56 223.0 209 63.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.2e-51 207.2 217 60.4
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.5e-51 206.8 207 57.0
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 4.5e-51 205.3 208 57.2
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 6.5e-50 201.4 208 54.8
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 6.5e-50 201.4 208 54.8
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.7e-48 196.1 213 56.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.8e-47 193.4 205 56.1
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 5.1e-47 191.8 204 55.9
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.3e-45 187.2 214 53.7
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.1e-44 182.6 204 52.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 7.4e-38 161.4 231 44.6
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.7e-37 159.1 232 45.7
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 9.0e-36 154.5 226 44.7
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-35 154.1 229 41.0
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 2.0e-35 153.3 233 43.8
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 3.8e-34 149.1 229 41.9
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.8e-34 149.1 228 46.1
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.0e-34 148.7 233 41.2
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.9e-33 146.7 237 44.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.2e-33 144.8 228 44.3
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.2e-33 144.8 228 44.3
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 7.9e-32 141.4 245 44.1
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 7.9e-32 141.4 245 44.1
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.0e-31 141.0 232 43.1
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.4e-31 140.6 226 42.5
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.0e-31 139.4 234 41.9
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 5.1e-31 138.7 213 44.1
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 2.6e-30 136.3 216 46.3
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 2.6e-30 136.3 230 41.3
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.6e-30 136.3 235 40.4
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.7e-30 135.2 233 37.8
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 5.7e-30 135.2 237 40.9
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.7e-30 134.4 228 40.4
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.7e-29 133.7 224 40.6
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.7e-29 133.7 236 43.2
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.2e-29 133.3 251 40.2
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.8e-29 132.9 228 42.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.7e-29 132.5 235 41.3
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.7e-29 132.5 217 41.0
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 4.8e-29 132.1 237 40.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.8e-29 132.1 228 42.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 6.3e-29 131.7 236 41.5
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 6.3e-29 131.7 236 41.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 6.3e-29 131.7 240 42.5
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.3e-29 131.7 234 41.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 8.2e-29 131.3 225 39.1
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-28 131.0 233 36.9
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.1e-28 131.0 236 40.3
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.9e-28 128.3 236 41.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.2e-27 127.5 241 38.6
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.5e-27 127.1 246 41.5
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.0e-27 126.7 237 42.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.4e-27 125.9 234 37.6
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.9e-26 122.9 231 38.5
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.1e-25 120.9 239 37.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 1.1e-25 120.9 237 37.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-25 120.2 245 36.3
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.2e-25 119.0 253 37.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 7.2e-25 118.2 238 37.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.4e-25 117.9 228 39.0
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.7e-24 116.3 226 37.2
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.7e-24 116.3 206 40.3
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.1e-24 115.2 226 34.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 6.1e-24 115.2 229 40.2
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 7.9e-24 114.8 231 35.9
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.0e-23 114.4 206 37.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.0e-23 114.4 214 39.7
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.4e-23 114.0 250 36.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.9e-23 112.5 245 38.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.8e-23 111.3 250 35.6
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-22 110.9 245 38.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.1e-22 110.9 250 36.8
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.6e-22 109.8 220 35.0
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.6e-22 109.8 244 35.7
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.6e-22 109.8 244 35.7
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 9.7e-22 107.8 205 41.0
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.3e-21 107.5 238 34.0
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-21 107.5 244 34.4
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.8e-21 106.3 233 33.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.7e-21 105.9 247 35.6
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.3e-21 105.1 247 34.8
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.1e-20 104.4 242 36.4
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.1e-20 102.8 226 33.6
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.1e-20 102.4 252 37.7
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 7.0e-20 101.7 224 38.4
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.1e-20 101.3 214 37.9
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 9.1e-20 101.3 231 35.1
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.0e-19 100.1 242 33.1
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 2.0e-19 100.1 254 32.7
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 5.9e-19 98.6 213 35.7
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.7e-18 97.1 219 33.8
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.2e-18 96.7 218 36.2
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.5e-17 94.0 239 29.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.5e-17 93.2 210 35.7
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.5e-17 93.2 213 36.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.2e-17 92.8 193 38.9
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 4.2e-17 92.4 230 31.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.2e-17 92.4 138 39.9
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.2e-16 90.9 236 33.9
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 3.6e-16 89.4 230 32.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.7e-16 89.0 245 31.8
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.8e-15 87.0 186 37.1
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.0e-15 86.3 229 31.4
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 6.7e-15 85.1 198 38.4
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 5.7e-14 82.0 199 36.7
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.8e-13 79.7 240 32.5
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.8e-12 77.0 269 32.7
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.8e-12 77.0 208 36.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.4e-12 76.6 252 30.2
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.4e-12 76.6 179 36.9
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.6e-11 73.9 202 31.2
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 5.9e-11 72.0 94 45.7
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 5.9e-11 72.0 259 28.2
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.7e-11 71.6 190 35.3
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.3e-10 70.9 240 29.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.7e-10 70.5 251 28.7
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 6.5e-10 68.6 174 32.8
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.5e-09 66.6 206 30.6
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.2e-09 66.2 219 30.1
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 7.2e-09 65.1 156 34.0
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 9.4e-09 64.7 198 31.3
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 6.1e-08 62.0 80 46.2
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.0e-07 59.7 101 40.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.0e-07 59.7 141 32.6
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 5.7e-06 55.5 133 33.8


User provided reference genes

Program Settings