Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 3.7e-112 408.3 215 100.0
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 2.7e-91 339.0 221 83.7
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.0e-89 332.8 214 84.1
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 9.7e-89 330.5 220 85.0
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.3e-88 330.1 221 82.4
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 2.2e-88 329.3 214 83.6
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 4.8e-88 328.2 222 81.5
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 8.2e-88 327.4 222 81.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.6e-86 323.2 223 82.1
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 5.9e-86 321.2 224 81.2
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 5.0e-85 318.2 223 81.2
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 5.0e-85 318.2 223 81.2
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.2e-84 315.5 217 81.6
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.3e-82 309.3 223 81.2
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.1e-81 307.0 229 79.0
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.3e-80 303.5 222 80.6
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 5.9e-78 294.7 223 79.8
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 4.2e-76 288.5 223 77.6
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.6e-75 286.6 215 76.7
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 7.0e-63 244.6 220 63.6
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.6e-46 190.3 213 54.9
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.0e-45 187.6 218 53.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.3e-45 186.4 194 55.7
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.5e-44 183.7 215 50.7
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.9e-44 183.3 198 52.5
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 3.3e-44 182.6 192 53.6
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 4.3e-44 182.2 217 53.5
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.6e-43 180.3 182 57.7
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 2.1e-43 179.9 212 50.9
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.8e-43 179.5 220 50.0
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 6.2e-43 178.3 214 50.9
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 8.1e-43 177.9 190 54.2
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 8.1e-43 177.9 222 51.4
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.8e-42 176.8 220 50.9
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 3.1e-42 176.0 203 51.7
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 4.0e-42 175.6 207 51.7
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 6.8e-42 174.9 209 51.2
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.5e-41 173.7 222 47.3
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 3.4e-41 172.6 190 53.2
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 4.4e-41 172.2 191 52.9
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 9.8e-41 171.0 211 49.8
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 1.3e-40 170.6 188 51.6
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 2.2e-40 169.9 186 51.1
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 6.4e-40 168.3 202 52.0
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.1e-39 167.5 212 51.9
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.9e-39 166.8 189 49.7
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.2e-39 166.0 194 53.1
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 3.2e-39 166.0 202 52.5
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.1e-39 165.6 210 48.6
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 9.2e-39 164.5 196 51.0
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.2e-38 164.1 189 49.2
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 1.2e-38 164.1 187 51.3
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.6e-38 163.7 195 52.3
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.6e-38 163.7 186 51.1
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-38 163.3 195 52.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 3.5e-38 162.5 188 51.1
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 4.6e-38 162.2 189 50.8
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.3e-37 160.6 219 48.4
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.3e-37 160.6 195 51.8
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-37 160.2 195 51.3
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.7e-37 160.2 198 50.0
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 2.3e-37 159.8 197 51.8
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 3.0e-37 159.5 206 48.5
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 3.0e-37 159.5 206 48.5
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 3.0e-37 159.5 178 50.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.0e-37 159.5 195 51.3
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 3.9e-37 159.1 193 47.7
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 5.1e-37 158.7 190 50.0
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 6.6e-37 158.3 169 57.4
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 6.6e-37 158.3 200 50.5
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 8.6e-37 157.9 213 45.1
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.5e-36 157.1 194 48.5
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.5e-36 157.1 206 46.6
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.9e-36 156.8 177 50.3
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 1.9e-36 156.8 191 49.7
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.5e-36 156.4 190 49.5
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 3.3e-36 156.0 206 46.6
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 5.6e-36 155.2 220 46.4
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.2e-35 154.1 184 50.0
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.6e-35 153.7 235 46.4
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.6e-35 153.7 194 48.5
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 2.1e-35 153.3 211 44.1
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 4.7e-35 152.1 233 43.3
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 6.2e-35 151.8 162 58.6
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.1e-34 151.0 183 46.4
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.8e-34 150.2 210 46.2
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 2.3e-34 149.8 198 47.5
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 2.3e-34 149.8 235 41.7
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 3.1e-34 149.4 210 45.2
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 4.0e-34 149.1 176 50.0
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 4.0e-34 149.1 190 47.9
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 5.2e-34 148.7 191 47.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 5.2e-34 148.7 191 48.7
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 8.9e-34 147.9 189 48.7
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 2.0e-33 146.7 200 42.5
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.6e-33 146.4 195 48.7
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.4e-33 145.6 164 51.8
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 9.9e-33 144.4 184 44.6
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 9.9e-33 144.4 226 43.4
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.8e-32 142.5 200 42.5
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 3.8e-32 142.5 203 47.3
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 6.4e-32 141.7 181 45.3
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.4e-31 140.6 213 45.1
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 4.1e-31 139.0 276 38.4
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 2.1e-30 136.7 228 41.2
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.7e-30 136.3 160 48.8
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 4.6e-30 135.6 207 42.5
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 8.6e-29 131.3 197 44.2
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 5.4e-23 112.1 265 36.6
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 6.0e-22 108.6 180 38.9
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.1e-19 100.1 151 41.1
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 8.1e-19 98.2 82 58.5
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 1.2e-17 94.4 71 67.6
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 1.5e-17 94.0 207 35.3
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 3.4e-17 92.8 299 28.4
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.7e-16 90.5 126 43.7
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.2e-16 90.1 115 45.2
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 6.7e-13 78.6 86 48.8
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 3.6e-11 72.8 202 28.2
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.4e-09 66.2 220 26.4
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.4e-07 60.8 56 55.4
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 3.5e-06 56.2 47 57.4
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 6.0e-06 55.5 157 28.0


User provided reference genes

Program Settings