Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 7.0e-133 477.2 233 100.0
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.0e-128 461.8 232 96.6
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 9.7e-127 456.8 233 94.4
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.2e-126 455.7 233 94.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.7e-126 454.9 232 94.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 4.8e-126 454.5 232 94.8
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.0e-124 449.1 228 93.9
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.8e-120 436.0 238 91.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.8e-120 436.0 238 91.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.0e-120 435.3 231 91.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 5.2e-120 434.5 228 93.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 3.4e-119 431.8 235 90.6
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 7.5e-119 430.6 235 90.2
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.7e-118 429.5 232 89.7
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.7e-118 429.5 235 90.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.8e-118 427.9 232 89.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.3e-118 427.6 232 89.7
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.6e-98 361.3 232 74.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 7.3e-98 360.9 212 83.5
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 7.5e-95 350.9 221 74.2
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 7.5e-95 350.9 221 74.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.7e-94 349.7 219 74.0
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.2e-94 349.4 233 70.0
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.9e-94 349.0 233 72.5
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.1e-93 347.1 233 70.0
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.4e-93 346.7 221 72.9
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.9e-93 346.3 225 73.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.9e-93 346.3 221 74.2
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 3.2e-93 345.5 221 72.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 4.1e-93 345.1 221 73.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.1e-93 345.1 234 70.9
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.4e-93 344.7 221 71.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.4e-93 344.7 221 71.9
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 5.4e-93 344.7 221 73.8
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 7.0e-93 344.4 232 69.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.0e-92 342.8 234 70.1
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.6e-92 341.7 234 70.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.0e-92 341.3 221 73.3
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 6.0e-92 341.3 221 71.5
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.3e-91 340.1 233 72.1
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.3e-91 339.3 232 70.3
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.3e-91 339.3 221 70.6
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.0e-91 339.0 217 74.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 3.9e-91 338.6 221 71.0
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 5.0e-91 338.2 218 73.4
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.6e-91 337.8 217 74.2
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.6e-91 337.4 234 70.1
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.1e-90 337.0 250 69.2
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.9e-90 336.3 233 70.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.3e-90 335.5 234 69.2
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.3e-90 335.1 234 69.2
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 5.6e-90 334.7 235 69.4
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 7.3e-90 334.3 233 69.5
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.3e-90 334.3 235 69.4
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 7.3e-90 334.3 221 71.5
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 9.5e-90 334.0 233 69.1
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 9.5e-90 334.0 233 68.7
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.2e-89 333.6 233 70.0
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-89 333.2 221 70.6
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 2.8e-89 332.4 235 69.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 4.7e-89 331.6 235 69.4
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.4e-88 330.1 217 72.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.8e-88 329.7 234 67.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.1e-88 328.9 233 67.4
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.0e-88 328.6 235 68.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.0e-88 328.6 236 67.4
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 8.9e-88 327.4 235 68.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.2e-87 327.0 256 63.7
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.5e-87 326.6 222 67.6
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.4e-87 325.5 234 67.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 4.4e-87 325.1 227 70.5
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 7.5e-87 324.3 222 66.7
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.7e-86 323.2 221 70.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 6.4e-86 321.2 233 67.4
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 6.4e-86 321.2 231 67.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.4e-85 320.1 232 64.7
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.4e-85 319.3 218 67.9
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.4e-85 318.2 250 63.6
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 7.1e-85 317.8 224 67.9
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.1e-85 317.8 226 67.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.6e-84 316.6 235 67.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-84 316.2 250 62.8
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.5e-84 315.5 237 63.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 3.5e-84 315.5 231 67.1
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.5e-84 315.5 226 68.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.6e-84 315.1 221 67.0
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.0e-83 313.9 226 67.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.7e-83 313.2 226 68.1
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.7e-83 313.2 223 67.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.3e-83 312.8 238 65.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.3e-83 312.8 226 65.5
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 3.0e-83 312.4 221 68.3
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.6e-83 311.2 229 65.5
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.3e-82 308.9 232 64.2
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.6e-82 308.1 226 66.8
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.2e-81 307.0 221 67.0
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.1e-81 306.2 207 70.5
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 3.6e-81 305.4 212 67.5
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-80 303.5 237 65.8
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-80 303.5 237 65.8
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.1e-80 302.4 213 67.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 4.0e-80 302.0 236 62.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.8e-80 301.2 227 63.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.8e-80 301.2 233 63.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.2e-79 300.4 224 65.2
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.2e-79 300.4 224 65.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.0e-79 299.7 217 68.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.0e-79 299.7 231 63.2
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 3.4e-79 298.9 224 64.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 4.4e-79 298.5 225 64.0
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 4.4e-79 298.5 233 63.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.8e-79 298.1 233 63.9
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.2e-78 296.2 231 64.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-77 293.9 237 64.1
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.9e-77 293.1 234 62.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.6e-76 290.0 227 61.2
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.6e-76 288.5 226 63.3
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 7.8e-76 287.7 228 62.3
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 2.3e-75 286.2 242 58.3
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 4.3e-74 282.0 255 55.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.2e-73 280.4 238 60.9
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 6.2e-73 278.1 180 78.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.8e-72 276.6 240 58.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.9e-70 269.2 217 63.6
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.9e-69 266.5 181 69.6
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 3.2e-69 265.8 186 69.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.3e-69 264.2 187 69.5
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.3e-67 260.4 233 58.8
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.3e-66 255.8 232 58.2
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 2.1e-65 253.1 233 56.7
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 6.9e-64 248.1 210 53.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.2e-61 239.2 163 70.6
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.8e-59 233.4 159 69.2
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.6e-57 226.9 160 64.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.5e-55 220.3 179 60.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 5.5e-53 211.8 228 47.4
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.6e-52 210.3 194 57.7
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 3.9e-51 205.7 249 45.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 6.7e-51 204.9 188 59.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.1e-49 199.9 152 69.1
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.5e-47 192.2 221 45.2
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.2e-46 189.9 202 47.5
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.3e-43 180.6 120 66.7
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.8e-43 180.3 146 63.7
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-41 172.6 133 59.4
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.3e-34 149.1 209 40.2
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 2.2e-33 146.7 90 73.3
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 3.8e-30 136.0 99 59.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-29 134.4 90 75.6
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 7.2e-29 131.7 94 67.0
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.4e-27 127.5 212 37.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-26 124.0 158 43.7
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.3e-26 122.9 73 86.3
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.0e-22 111.3 92 60.9
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.7e-20 102.4 85 61.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 8.0e-20 101.7 202 29.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.1e-18 97.8 67 68.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 7.0e-16 88.6 106 41.5
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.5e-15 86.3 72 65.3
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.5e-15 85.9 77 61.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.9e-15 85.5 72 65.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-14 84.0 77 59.7
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.1e-12 75.5 62 59.7
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 7.5e-10 68.6 152 29.6
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.8e-09 65.9 54 59.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.0e-07 60.5 46 69.6
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 5.0e-06 55.8 45 55.6
BraA05t19164Z Brassica rapa HOM05D004213 ORTHO05D107977 6.5e-06 55.5 27 88.9


User provided reference genes

Program Settings