Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.8e-142 509.2 256 100.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.7e-124 449.5 254 89.0
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 6.5e-124 447.6 257 89.5
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.2e-123 445.3 254 88.2
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 4.2e-123 444.9 256 88.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.0e-121 440.3 255 87.8
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.4e-121 439.9 255 87.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.8e-121 439.5 255 87.5
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 3.1e-118 428.7 254 85.8
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 9.1e-118 427.2 256 85.2
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 3.4e-117 425.2 256 84.0
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.4e-117 425.2 255 85.5
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 5.9e-117 424.5 254 86.6
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 5.9e-117 424.5 254 86.6
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 5.0e-116 421.4 256 81.6
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.5e-115 419.1 256 82.0
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.2e-109 400.2 257 78.2
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.7e-95 352.1 249 72.3
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 8.0e-90 334.3 256 67.6
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.4e-89 333.6 256 67.6
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.2e-88 330.5 256 66.8
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.4e-73 280.4 254 55.1
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.3e-73 279.6 254 54.7
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.2e-72 277.3 242 57.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.7e-71 272.3 254 54.7
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 3.2e-70 269.2 254 54.3
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.2e-70 269.2 254 54.7
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 5.4e-70 268.5 254 54.3
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.6e-69 266.9 256 52.7
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.6e-69 265.4 254 52.4
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.0e-68 262.7 254 51.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 3.3e-67 259.2 254 52.4
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 4.3e-67 258.8 254 52.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.2e-66 257.3 256 51.2
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.6e-66 256.9 254 52.8
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 6.2e-66 255.0 238 55.9
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 6.2e-66 255.0 244 51.6
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.9e-65 251.1 254 52.8
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.2e-64 250.8 248 52.0
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.0e-64 250.0 256 50.4
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.0e-64 250.0 270 48.9
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.0e-64 250.0 256 50.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 7.5e-64 248.1 239 52.7
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.7e-63 246.9 255 52.9
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.2e-63 246.5 243 50.6
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.2e-63 246.5 256 48.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.9e-63 245.4 255 52.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.9e-63 245.4 254 49.2
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 4.1e-62 242.3 254 48.8
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 5.4e-62 241.9 256 49.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.4e-62 241.9 255 47.8
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 7.1e-62 241.5 243 49.8
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.2e-61 240.7 254 49.6
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.6e-61 240.4 241 49.4
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.1e-61 240.0 256 48.8
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 2.7e-61 239.6 239 50.2
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.6e-61 238.8 235 50.6
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.0e-61 238.4 247 47.8
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 6.0e-61 238.4 256 44.9
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 6.0e-61 238.4 243 49.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.0e-60 237.7 252 49.2
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.3e-60 237.3 256 49.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 3.0e-60 236.1 239 49.4
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.0e-60 236.1 247 50.6
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 5.1e-60 235.3 240 50.4
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 6.6e-60 235.0 257 49.4
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.6e-60 235.0 254 48.4
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.1e-59 234.2 256 47.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.9e-59 233.4 241 51.9
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.5e-59 233.0 237 49.4
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.6e-59 231.9 237 51.9
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 5.6e-59 231.9 242 47.5
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.6e-59 231.9 247 47.8
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 5.6e-59 231.9 256 46.9
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 3.6e-58 229.2 253 47.0
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 8.1e-58 228.0 239 48.5
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.4e-57 227.3 239 48.5
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.4e-57 226.5 245 45.7
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 3.1e-57 226.1 235 48.5
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.2e-56 224.2 239 47.7
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.2e-56 224.2 241 47.3
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.6e-56 223.0 247 49.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.4e-56 222.2 239 45.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 4.4e-56 222.2 257 45.1
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 5.8e-56 221.9 265 46.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 5.8e-56 221.9 241 49.0
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 7.6e-56 221.5 245 48.2
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.2e-55 219.9 256 44.9
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.9e-55 218.8 234 49.6
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.1e-54 217.6 189 59.3
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.1e-54 217.6 234 49.6
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.1e-54 217.6 226 49.1
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 7.1e-54 214.9 242 45.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 7.1e-54 214.9 240 45.4
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 9.2e-54 214.5 254 45.7
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 9.2e-54 214.5 236 47.9
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-53 214.2 236 47.0
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-53 214.2 236 47.0
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.1e-53 213.4 226 47.3
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.7e-53 213.0 233 45.1
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.7e-53 213.0 239 45.6
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.6e-53 212.2 234 48.3
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.6e-53 212.2 242 44.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 6.0e-53 211.8 211 52.1
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 7.8e-53 211.5 244 42.6
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.7e-52 210.3 244 46.3
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 8.7e-52 208.0 237 46.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.1e-51 207.6 226 47.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.2e-50 204.1 235 46.8
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.1e-49 201.1 227 47.1
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.4e-49 200.7 237 46.0
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 4.0e-49 199.1 256 46.1
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 4.0e-49 199.1 243 43.6
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 9.0e-49 198.0 224 50.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.0e-48 196.8 227 49.8
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-46 191.0 211 49.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-46 191.0 211 49.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.2e-46 189.5 237 44.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 5.4e-46 188.7 227 43.6
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 9.3e-46 188.0 241 43.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.8e-45 184.9 213 47.9
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.3e-44 184.1 181 51.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.0e-44 183.0 163 57.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.1e-43 181.0 236 41.1
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.6e-43 178.7 233 42.5
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.1e-42 176.8 208 44.7
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.8e-42 176.4 254 40.9
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.6e-40 169.9 217 44.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.6e-40 169.9 182 48.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.6e-40 169.9 182 48.9
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.6e-40 168.3 195 47.2
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.4e-38 162.2 211 43.1
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.0e-36 157.9 261 37.2
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.3e-36 156.8 239 36.4
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 4.2e-30 136.0 174 42.5
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.0e-28 131.3 242 31.4
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 6.9e-25 118.6 167 37.7
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.5e-24 117.5 101 56.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.8e-23 112.8 103 54.4
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.1e-21 107.1 135 44.4
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.1e-21 107.1 256 28.9
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 6.0e-21 105.5 139 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.5e-19 100.9 188 34.6
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.3e-18 97.8 86 54.7
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.8e-18 96.7 90 53.3
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.1e-17 94.7 89 53.9
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 8.5e-15 85.1 86 47.7
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 2.1e-13 80.5 138 35.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.7e-13 80.1 94 42.6
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 6.1e-13 79.0 118 39.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.0e-08 63.9 47 70.2
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 1.7e-07 60.8 44 68.2
C03p12380 Brassica napus HOM05D000444 ORTHO05D000489 2.5e-06 57.0 25 100.0


User provided reference genes

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