Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.6e-130 469.5 257 100.0
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.2e-77 293.9 258 66.7
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.1e-70 270.8 256 65.2
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.2e-62 242.7 234 62.0
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 3.2e-62 242.7 234 62.0
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 5.4e-62 241.9 255 58.0
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.6e-61 240.4 184 70.1
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 3.9e-60 235.7 242 57.9
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.9e-43 180.3 186 54.3
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 3.5e-37 159.5 139 66.2
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.4e-30 137.5 112 68.8
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.5e-27 127.5 173 46.2
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.5e-27 126.7 182 40.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 3.3e-27 126.3 193 42.0
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 3.7e-26 122.9 156 46.2
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 6.3e-26 122.1 164 41.5
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 4.1e-25 119.4 204 39.7
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 4.1e-25 119.4 185 41.1
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 5.3e-25 119.0 208 38.9
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-24 117.9 169 40.8
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.2e-24 117.9 175 40.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.0e-24 117.1 161 43.5
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.5e-24 115.9 190 40.0
CARHR000610 Cardamine hirsuta HOM05D005367 ORTHO05D006328 1.0e-23 114.8 132 59.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 2.2e-23 113.6 158 44.9
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.2e-23 113.6 195 37.9
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.2e-23 113.6 170 39.4
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.0e-23 112.5 171 39.2
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 5.0e-23 112.5 151 44.4
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.0e-23 112.5 195 37.4
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 6.5e-23 112.1 198 36.9
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.1e-22 111.3 205 35.1
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.5e-22 110.2 154 39.6
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 3.2e-22 109.8 184 36.4
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.2e-22 109.4 175 37.1
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 4.2e-22 109.4 158 39.9
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.5e-22 109.0 163 39.9
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 5.5e-22 109.0 161 39.1
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 5.5e-22 109.0 164 37.2
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-22 108.6 175 40.0
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-22 108.6 175 40.0
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 9.4e-22 108.2 169 40.8
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.2e-21 107.8 198 35.4
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.2e-21 107.8 164 36.6
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.2e-21 107.8 152 42.8
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.1e-21 107.1 186 37.1
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-21 107.1 169 40.2
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 2.1e-21 107.1 178 37.1
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 2.1e-21 107.1 153 40.5
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-21 106.7 175 39.4
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.7e-21 106.7 179 38.0
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 4.6e-21 105.9 168 39.9
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.6e-21 105.9 179 38.0
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 6.1e-21 105.5 160 39.4
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.0e-20 104.8 160 35.6
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.4e-20 104.4 179 37.4
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.4e-20 104.4 161 39.1
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.4e-20 104.4 182 39.0
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.8e-20 104.0 159 40.3
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.8e-20 104.0 187 36.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.8e-20 104.0 171 37.4
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.8e-20 104.0 167 34.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.8e-20 104.0 172 38.4
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.8e-20 104.0 174 36.8
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.3e-20 103.6 159 40.3
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.3e-20 103.6 161 37.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 3.0e-20 103.2 185 38.9
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 3.0e-20 103.2 161 35.4
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 3.9e-20 102.8 149 39.6
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 3.9e-20 102.8 185 36.2
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 5.1e-20 102.4 155 40.6
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 5.1e-20 102.4 207 36.2
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 6.7e-20 102.1 181 38.7
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 8.8e-20 101.7 163 38.0
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.1e-19 101.3 184 36.4
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.1e-19 101.3 175 36.6
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.5e-19 100.9 220 34.1
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.6e-19 100.1 149 40.3
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 3.3e-19 99.8 173 38.2
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 3.3e-19 99.8 166 36.7
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 3.3e-19 99.8 206 32.0
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 4.4e-19 99.4 184 37.5
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 4.4e-19 99.4 179 36.3
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 5.7e-19 99.0 166 35.5
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 5.7e-19 99.0 154 37.0
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 7.4e-19 98.6 175 36.0
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 7.4e-19 98.6 237 34.2
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 7.4e-19 98.6 157 37.6
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 7.4e-19 98.6 164 40.2
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 9.7e-19 98.2 169 36.7
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 2.8e-18 96.7 172 36.0
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 6.3e-18 95.5 181 34.8
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 8.2e-18 95.1 152 37.5
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.1e-17 94.7 166 36.7
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.1e-17 94.7 165 37.0
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.1e-17 94.7 165 36.4
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 3.1e-17 93.2 168 36.3
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 5.3e-17 92.4 200 35.0
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.2e-16 91.3 181 34.8
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.2e-16 91.3 146 36.3
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 2.6e-16 90.1 220 33.6
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 7.7e-16 88.6 147 38.1
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 7.7e-16 88.6 156 37.2
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 7.7e-16 88.6 191 33.5
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 2.2e-15 87.0 219 33.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.8e-15 86.3 155 34.8
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 3.8e-15 86.3 154 36.4
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 5.0e-15 85.9 168 32.1
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 6.5e-15 85.5 187 33.2
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 8.5e-15 85.1 155 36.1
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.4e-14 84.3 174 31.6
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 2.5e-14 83.6 167 32.9
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.6e-13 80.9 170 31.8
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-12 78.2 179 33.0
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-12 77.4 88 48.9
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-12 77.4 88 48.9
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.0e-12 76.6 199 32.2
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.0e-12 76.6 199 32.2
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.2e-12 75.9 133 36.1
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 8.8e-12 75.1 139 36.0
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-11 74.3 188 30.9
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 2.6e-11 73.6 217 29.5
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 3.3e-11 73.2 146 35.6
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-10 70.5 133 34.6
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.6e-08 63.5 216 30.1
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-07 60.8 133 32.3
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 3.8e-07 59.7 64 42.2
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-06 58.2 78 42.3
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.5e-06 57.8 141 31.2
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-06 57.4 178 28.1
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-06 57.4 178 28.1


User provided reference genes

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