Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 3.5e-155 551.6 279 100.0
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.1e-140 501.5 279 91.0
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 7.8e-139 497.3 279 89.6
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.1e-137 493.4 279 88.9
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.8e-135 486.1 279 87.8
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 2.3e-135 485.7 279 88.2
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.4e-132 476.5 279 87.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 3.5e-131 471.9 279 86.7
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 6.0e-131 471.1 279 85.3
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 3.3e-129 465.3 279 84.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 5.2e-127 458.0 299 79.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 4.9e-125 451.4 279 84.2
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 8.6e-122 440.7 279 82.4
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 8.6e-122 440.7 279 82.4
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.7e-114 416.4 279 76.7
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.1e-104 382.9 277 70.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.9e-100 369.8 279 67.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 5.3e-87 325.1 240 65.4
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 7.2e-84 314.7 248 63.7
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 9.3e-84 314.3 277 58.8
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.2e-83 313.9 253 61.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.1e-83 313.2 262 59.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 3.6e-83 312.4 234 63.7
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.8e-82 310.1 243 62.1
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 3.0e-82 309.3 233 65.7
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.9e-82 308.9 239 64.0
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 3.9e-82 308.9 249 61.8
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 5.1e-82 308.5 264 58.3
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 6.7e-82 308.1 230 64.3
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.5e-81 307.0 240 64.6
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 7.4e-81 304.7 239 61.9
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 7.4e-81 304.7 248 58.5
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 7.4e-81 304.7 246 61.8
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 9.7e-81 304.3 241 63.1
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.3e-80 303.9 244 63.1
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.3e-80 303.9 233 63.9
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.6e-80 303.5 240 62.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 2.8e-80 302.8 251 59.8
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.8e-80 302.8 244 63.1
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.7e-80 302.4 242 62.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 4.8e-80 302.0 244 61.5
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 6.3e-80 301.6 241 62.7
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 8.2e-80 301.2 284 56.3
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.1e-79 300.8 249 61.0
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.4e-79 300.4 274 57.7
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.8e-79 300.1 242 60.7
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.8e-79 300.1 231 62.3
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.8e-79 300.1 233 61.8
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 4.1e-79 298.9 269 56.9
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.1e-79 298.9 252 58.3
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.1e-79 298.9 271 56.8
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 5.3e-79 298.5 236 62.7
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 9.1e-79 297.7 240 61.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.5e-78 297.0 240 59.2
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.5e-78 297.0 278 56.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.0e-78 296.6 271 56.5
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 4.5e-78 295.4 240 60.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.0e-77 294.3 232 62.1
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.0e-77 294.3 254 57.1
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.0e-77 294.3 278 56.5
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.3e-77 293.9 236 59.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-77 293.9 237 62.9
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 2.9e-77 292.7 225 62.2
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.8e-77 292.4 246 58.5
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.4e-76 290.4 264 56.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.9e-76 290.0 236 61.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.2e-76 288.9 236 61.0
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 5.5e-76 288.5 241 58.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 9.4e-76 287.7 249 59.4
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.0e-74 284.3 245 56.3
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.0e-74 284.3 245 56.3
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.9e-74 282.3 241 58.9
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-73 280.4 277 52.0
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.5e-73 280.4 277 52.0
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 4.4e-73 278.9 247 54.7
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 4.4e-73 278.9 272 55.5
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.2e-72 276.6 274 52.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.1e-71 274.2 251 56.6
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.1e-71 272.3 252 55.2
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.0e-70 270.0 252 54.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.9e-69 266.2 224 60.3
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.4e-68 261.2 205 60.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.2e-67 260.8 276 52.2
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 1.0e-66 257.7 206 62.6
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.7e-64 249.2 185 66.5
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 3.1e-63 246.1 267 49.1
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.6e-62 243.0 198 61.6
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.6e-62 243.0 228 51.8
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.5e-62 242.3 239 50.6
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.3e-61 240.7 198 61.6
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.3e-61 240.7 186 61.8
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.9e-61 239.6 245 49.4
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.6e-59 233.8 257 47.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.3e-58 229.9 241 50.2
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.2e-58 228.8 246 45.9
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 8.8e-58 228.0 197 57.9
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.4e-57 225.7 219 53.9
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.7e-56 222.6 185 57.8
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.4e-55 219.9 225 48.9
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.7e-54 214.9 180 57.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.2e-46 191.0 159 58.5
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-41 174.1 187 48.7
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.5e-41 174.1 124 66.9
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 7.5e-41 171.8 177 53.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 4.9e-40 169.1 217 39.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 8.3e-40 168.3 122 63.9
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-39 166.4 223 43.0
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.5e-33 147.5 153 53.6
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.6e-29 131.7 180 40.6
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 6.2e-27 125.6 95 69.5
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-26 123.6 254 35.4
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.9e-26 121.7 124 49.2
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.7e-24 116.3 130 45.4
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.3e-24 115.2 115 49.6
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.6e-22 109.4 110 50.0
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.0e-21 106.7 86 60.5
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-20 104.0 103 49.5
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.2e-19 99.0 74 60.8
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-17 93.6 70 60.0
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-16 91.3 96 47.9
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.9e-16 90.1 82 45.1
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.2e-14 84.7 108 43.5
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.8e-14 82.0 136 39.7
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.1e-12 78.2 66 54.5
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-12 77.0 99 41.4
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-10 71.2 87 42.5
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.8e-09 65.9 52 53.8
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 7.6e-09 65.5 76 46.1
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 7.1e-07 58.9 47 46.8
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 7.1e-07 58.9 47 46.8
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-06 57.8 76 39.5
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 4.6e-06 56.2 55 50.9
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 6.0e-06 55.8 41 63.4
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 7.8e-06 55.5 53 41.5
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 7.8e-06 55.5 53 41.5


User provided reference genes

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