Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 4.0e-184 647.9 312 100.0
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 5.4e-165 584.3 312 88.5
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 3.5e-164 581.6 312 88.5
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 3.0e-163 578.6 313 89.8
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 7.3e-162 573.9 312 87.5
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 7.3e-162 573.9 312 87.5
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 7.3e-162 573.9 312 87.5
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 7.3e-162 573.9 315 88.3
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.2e-161 573.2 312 87.5
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 4.0e-160 568.2 312 87.2
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 2.8e-153 545.4 312 84.0
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 1.9e-146 522.7 314 80.6
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 3.0e-131 472.2 321 71.7
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.1e-120 435.3 312 67.3
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.0e-119 433.0 321 66.4
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 2.6e-119 432.6 312 67.0
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.9e-118 429.1 312 66.3
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 3.2e-117 425.6 320 65.3
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 3.6e-116 422.2 322 62.1
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 1.8e-115 419.9 332 64.2
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.3e-114 415.6 318 64.8
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 3.3e-114 415.6 321 62.0
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 3.3e-114 415.6 312 63.1
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 4.4e-114 415.2 318 64.2
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 5.7e-114 414.8 321 63.2
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.3e-113 413.7 320 61.6
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.7e-113 413.3 313 63.9
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 2.2e-113 412.9 312 61.5
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.8e-113 411.8 313 65.8
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 8.2e-113 411.0 312 61.5
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.4e-112 410.2 313 66.1
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.4e-112 410.2 316 63.9
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.4e-112 410.2 314 65.0
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.8e-112 409.8 315 64.8
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.4e-112 409.5 317 62.8
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 4.1e-112 408.7 324 63.6
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 6.9e-112 407.9 322 62.1
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.2e-111 407.1 313 62.6
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.5e-111 406.8 312 63.5
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.0e-111 406.4 313 65.5
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 4.5e-111 405.2 318 63.2
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 4.5e-111 405.2 354 57.9
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 2.2e-110 402.9 324 61.4
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.9e-110 402.5 312 63.1
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 5.0e-110 401.7 324 64.2
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.1e-109 400.6 318 61.9
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.1e-109 400.6 311 64.0
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 1.4e-109 400.2 318 60.7
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.9e-109 399.8 318 62.6
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 4.2e-109 398.7 320 62.5
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 9.4e-109 397.5 321 59.8
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.2e-108 397.1 310 64.5
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.1e-108 396.4 320 62.2
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 6.1e-108 394.8 316 62.7
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 7.9e-108 394.4 310 62.9
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.0e-107 394.0 319 60.5
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.8e-107 393.3 313 61.3
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.7e-106 388.3 269 71.0
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 2.8e-105 386.0 310 62.3
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.8e-104 383.3 318 57.9
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 9.1e-104 380.9 312 59.6
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 2.0e-103 379.8 315 60.3
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.3e-102 377.1 315 59.0
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 3.8e-102 375.6 319 58.6
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 3.8e-102 375.6 315 58.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 8.5e-102 374.4 321 57.9
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.1e-101 374.0 322 58.4
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 2.5e-101 372.9 313 58.8
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 3.2e-101 372.5 362 53.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.2e-101 372.1 311 58.8
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.6e-100 370.2 315 58.7
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 2.7e-100 369.4 313 58.5
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.4e-99 367.1 327 55.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.8e-99 366.7 317 56.8
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.2e-98 364.0 311 57.6
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 3.3e-98 362.5 278 60.4
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 7.5e-98 361.3 251 69.7
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.8e-96 356.7 291 59.1
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 1.1e-93 347.4 237 70.5
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 4.2e-93 345.5 323 54.8
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 5.5e-93 345.1 234 70.9
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.1e-92 343.2 323 54.5
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.5e-90 337.0 313 55.0
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.5e-90 337.0 313 57.8
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.3e-89 334.0 236 68.6
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.8e-89 332.8 321 53.0
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 3.7e-89 332.4 329 52.3
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 7.0e-88 328.2 236 64.4
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 1.6e-87 327.0 323 54.2
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 3.5e-87 325.9 331 51.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.5e-87 325.9 312 52.6
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.9e-85 320.1 316 55.4
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 3.0e-83 312.8 329 52.9
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 8.8e-83 311.2 156 93.6
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.0e-75 287.7 316 50.9
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.0e-75 286.2 317 45.7
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 2.2e-73 280.0 319 48.6
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 3.2e-72 276.2 246 54.9
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 4.1e-72 275.8 309 47.6
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 3.9e-70 269.2 312 46.8
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.1e-69 267.7 271 51.3
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.5e-69 266.5 243 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 3.6e-68 262.7 234 53.4
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 4.7e-68 262.3 208 60.6
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.5e-66 257.3 251 49.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.7e-65 253.8 248 53.6
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.0e-62 243.0 211 57.3
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.6e-61 238.8 177 70.1
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 2.6e-58 229.9 174 66.1
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.6e-52 210.7 315 37.5
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 4.7e-52 209.1 215 48.4
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.2e-49 200.3 252 47.6
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.0e-46 191.4 127 67.7
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 2.1e-44 183.7 143 65.7
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.4e-43 180.3 224 42.9
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.6e-42 176.8 143 55.2
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.3e-37 159.5 144 51.4
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 5.6e-37 159.1 239 41.0
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.3e-36 157.9 278 36.0
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 1.6e-36 157.5 218 39.9
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 8.1e-36 155.2 446 28.0
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 3.8e-33 146.4 115 60.9
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.3e-32 141.7 170 46.5
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.2e-18 98.2 61 70.5
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.1e-16 91.7 53 73.6
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 7.9e-15 85.5 67 50.7
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 2.3e-14 84.0 51 70.6
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.3e-12 78.2 45 68.9
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 1.3e-12 78.2 56 55.4
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 7.2e-08 62.4 35 71.4
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.9e-06 56.6 37 62.2
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 8.7e-06 55.5 31 77.4


User provided reference genes

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