Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 2.3e-162 575.9 374 100.0
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 5.5e-132 474.9 376 78.2
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 1.4e-114 417.2 409 75.1
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 2.3e-109 399.8 374 70.9
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 3.0e-109 399.4 425 69.9
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 5.1e-109 398.7 429 53.6
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 4.0e-106 389.0 394 67.3
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 2.4e-103 379.8 410 53.9
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 5.4e-103 378.6 386 57.0
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 3.5e-102 375.9 378 56.6
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 2.5e-100 369.8 387 71.1
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 1.2e-94 350.9 408 69.4
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 7.3e-84 315.1 374 48.7
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 5.6e-76 288.9 360 48.3
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 7.4e-52 208.8 375 37.1
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 1.3e-51 208.0 351 36.8
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 4.1e-50 203.0 351 36.2
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 5.9e-49 199.1 371 36.9
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 1.3e-48 198.0 351 37.3
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.2e-48 197.2 355 34.6
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 8.5e-48 195.3 369 35.5
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 3.6e-46 189.9 371 35.8
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 4.7e-46 189.5 346 34.4
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 6.1e-46 189.1 375 34.4
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 2.3e-45 187.2 360 34.2
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 3.0e-45 186.8 362 36.5
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 3.9e-45 186.4 353 35.7
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 2.0e-44 184.1 354 34.5
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 2.0e-44 184.1 355 35.5
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 2.0e-44 184.1 379 34.8
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 9.7e-44 181.8 380 35.8
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 2.2e-43 180.6 370 34.3
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 4.8e-43 179.5 353 34.8
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 2.0e-41 174.1 389 34.2
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 2.9e-40 170.2 413 31.0
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 6.5e-40 169.1 195 44.6
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.2e-38 164.9 373 33.8
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 3.6e-38 163.3 375 31.7
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 4.7e-38 162.9 373 35.9
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 1.4e-37 161.4 218 44.0
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 2.3e-37 160.6 377 34.0
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 3.0e-37 160.2 373 35.1
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 3.9e-37 159.8 382 37.4
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 3.9e-37 159.8 374 34.0
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 2.6e-36 157.1 387 30.7
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 3.3e-36 156.8 389 40.4
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 5.7e-36 156.0 375 31.5
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 7.0e-34 149.1 384 33.6
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 7.0e-34 149.1 362 32.0
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 1.6e-33 147.9 377 30.2
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 2.0e-33 147.5 330 33.3
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 4.5e-33 146.4 359 32.3
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 7.7e-33 145.6 360 29.7
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 1.1e-31 141.7 379 31.4
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.9e-31 141.0 213 37.6
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.9e-31 141.0 213 37.6
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 1.9e-31 141.0 385 29.6
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 4.7e-30 136.3 376 30.6
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 8.0e-30 135.6 368 30.2
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 2.3e-29 134.0 378 27.5
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 3.0e-29 133.7 387 28.9
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 3.0e-29 133.7 196 39.3
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 5.2e-29 132.9 363 29.8
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 6.8e-29 132.5 219 36.5
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.0e-28 131.0 131 48.1
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 4.4e-28 129.8 361 30.2
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 9.7e-28 128.6 344 30.8
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 1.3e-27 128.3 168 44.6
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 1.1e-26 125.2 391 29.9
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 4.1e-26 123.2 358 29.6
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 5.3e-26 122.9 369 29.3
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.0e-25 120.9 166 41.0
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 2.9e-24 117.1 350 29.1
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 6.5e-24 115.9 172 42.4
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 1.1e-23 115.2 383 29.8
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 4.2e-23 113.2 220 34.1
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 5.5e-23 112.8 377 28.6
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 9.4e-23 112.1 365 28.8
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.0e-21 108.6 203 37.4
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.8e-21 107.8 215 37.2
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 2.3e-21 107.5 379 24.8
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 2.3e-21 107.5 134 42.5
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 5.2e-21 106.3 135 44.4
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.5e-20 104.8 191 37.7
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 1.5e-20 104.8 122 48.4
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 4.4e-20 103.2 219 32.9
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 1.1e-18 98.6 379 26.4
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 1.8e-18 97.8 217 29.5
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 3.1e-18 97.1 134 44.8
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 9.1e-18 95.5 89 50.6
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 1.2e-17 95.1 280 30.0
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 2.0e-17 94.4 170 32.9
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 5.0e-16 89.7 287 28.2
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 6.6e-16 89.4 137 38.0
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 8.6e-16 89.0 105 43.8
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 5.5e-15 86.3 423 26.5
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 9.5e-15 85.5 129 41.9
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 9.5e-15 85.5 198 33.8
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 6.1e-14 82.8 131 40.5
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 1.8e-13 81.3 133 39.8
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 3.0e-13 80.5 165 34.5
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.8e-10 71.2 397 30.7
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 3.2e-10 70.5 120 39.2
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 3.2e-10 70.5 125 31.2
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 4.1e-10 70.1 64 56.2
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 2.9e-08 63.9 64 48.4
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 1.9e-07 61.2 231 26.0
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 1.6e-06 58.2 231 25.1
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 8.0e-06 55.8 29 69.0


User provided reference genes

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