Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.2e-214 749.6 389 100.0
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-190 669.8 405 87.2
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-183 646.7 404 85.1
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.1e-182 641.0 403 85.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 7.4e-180 634.0 408 83.1
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.3e-173 612.5 401 82.3
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-169 599.4 408 82.8
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 5.9e-169 597.8 408 82.8
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.0e-165 587.0 409 80.4
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 7.5e-164 580.9 414 80.9
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 9.7e-164 580.5 409 79.7
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.0e-160 568.2 420 77.4
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.3e-151 538.9 418 72.0
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.2e-148 530.4 427 70.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 8.3e-147 524.2 410 72.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.8e-146 523.1 408 70.3
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 5.4e-146 521.5 401 73.1
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 7.0e-146 521.2 399 72.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.6e-144 514.6 409 71.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.9e-143 513.1 407 71.3
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.3e-143 511.9 433 67.7
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 4.7e-142 508.4 399 72.4
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.0e-141 507.3 399 72.2
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.0e-141 507.3 399 72.2
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.0e-141 507.3 412 71.6
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 4.0e-141 505.4 377 70.3
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 3.4e-140 502.3 427 66.3
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 9.2e-138 494.2 432 63.9
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 7.8e-137 491.1 428 65.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.3e-136 489.6 425 66.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.9e-136 488.8 407 69.0
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 5.8e-132 474.9 438 63.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.7e-131 473.4 393 65.4
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 4.9e-131 471.9 399 63.4
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.4e-130 470.3 425 62.1
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.1e-130 468.0 430 63.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 7.1e-130 468.0 430 63.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 7.1e-130 468.0 384 65.6
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 7.1e-130 468.0 437 63.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 9.2e-130 467.6 436 63.1
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 3.5e-129 465.7 425 61.6
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.3e-128 463.8 430 61.4
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.7e-128 463.4 420 63.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.0e-128 462.6 405 63.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.9e-128 462.2 431 62.9
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 8.6e-128 461.1 429 62.7
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.6e-128 461.1 380 63.7
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.1e-127 460.7 425 64.2
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.9e-127 459.9 435 61.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 3.3e-127 459.1 404 61.6
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 3.3e-127 459.1 393 63.9
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 4.3e-127 458.8 433 63.0
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 4.3e-127 458.8 432 63.9
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.6e-127 458.4 423 62.6
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 5.6e-127 458.4 376 63.8
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 9.5e-127 457.6 399 63.2
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-126 457.2 430 61.9
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.6e-126 456.8 376 64.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.8e-126 456.1 390 62.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 6.2e-126 454.9 387 61.5
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.0e-125 452.2 393 60.1
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 6.8e-125 451.4 427 60.7
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 6.8e-125 451.4 432 61.1
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 8.9e-125 451.1 392 59.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.5e-124 450.3 425 60.9
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.5e-124 450.3 421 61.8
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.0e-124 449.9 430 58.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 4.4e-124 448.7 423 61.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.4e-124 448.7 430 58.8
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.3e-123 447.2 385 60.0
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-123 446.8 385 62.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-123 446.8 385 62.9
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.7e-123 446.8 387 62.3
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.2e-123 446.4 385 62.6
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.2e-123 446.4 385 62.6
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.9e-123 446.0 402 62.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 6.4e-123 444.9 428 61.0
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 8.3e-123 444.5 385 59.5
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 8.3e-123 444.5 429 60.6
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.1e-122 444.1 432 61.1
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.2e-122 442.6 401 59.4
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 3.2e-122 442.6 390 60.3
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.6e-121 440.3 420 59.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.7e-121 439.5 429 59.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.5e-121 439.1 385 61.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.0e-120 437.6 428 58.2
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.7e-120 436.8 423 59.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.5e-119 433.7 428 58.9
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.5e-119 433.7 413 61.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.9e-119 433.3 411 58.2
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 4.3e-119 432.2 402 58.5
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 5.6e-119 431.8 388 58.5
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.6e-119 431.0 426 58.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 4.7e-118 428.7 437 57.2
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 8.9e-117 424.5 405 58.3
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.5e-116 423.7 396 58.3
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.6e-116 422.9 442 57.7
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 9.9e-116 421.0 422 59.0
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.4e-114 417.2 421 56.8
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.2e-114 416.0 431 58.0
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 3.0e-112 409.5 403 58.3
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.5e-111 407.1 421 55.3
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 5.6e-111 405.2 361 58.7
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 7.3e-111 404.8 440 57.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.8e-110 402.9 387 58.4
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 3.6e-110 402.5 437 57.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 6.2e-110 401.7 414 58.0
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.4e-109 400.6 416 59.4
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.1e-109 399.4 373 56.0
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.0e-109 397.9 372 55.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 9.0e-109 397.9 373 55.8
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 8.4e-107 391.3 358 58.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 7.3e-103 378.3 363 57.3
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.2e-102 375.2 363 57.9
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 5.8e-100 368.6 288 66.0
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 6.4e-99 365.2 460 49.6
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 6.0e-97 358.6 393 51.4
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.6e-95 352.1 368 52.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.2e-91 340.1 390 47.7
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.9e-91 339.7 323 58.8
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 3.9e-88 329.3 372 49.5
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.5e-74 282.3 314 51.6
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.9e-66 257.3 423 41.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 3.7e-62 243.0 395 38.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 3.1e-61 240.0 234 55.6
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 7.7e-60 235.3 289 48.4
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 9.4e-58 228.4 207 55.6
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.5e-55 221.1 158 73.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.3e-53 212.6 225 61.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.1e-50 204.9 187 66.3
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 9.4e-50 201.8 203 48.8
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.2e-48 196.1 153 66.7
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 5.7e-47 192.6 146 69.2
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.7e-46 189.9 216 53.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.7e-44 183.7 207 51.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.1e-37 161.8 355 31.3
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.4e-37 161.4 286 33.6
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.0e-25 119.0 65 84.6
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.7e-19 101.3 113 54.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.9e-13 81.3 312 26.3
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.6e-12 76.6 63 54.0
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 2.8e-09 67.4 36 80.6
C08p14660 Brassica napus HOM05D023945 ORTHO05D042485 1.3e-06 58.5 47 61.7
BolC5t29789H Brassica oleracea HOM05D005312 ORTHO05D006459 2.2e-06 57.8 32 75.0


User provided reference genes

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