Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 4.4e-239 830.9 412 100.0
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 2.7e-204 715.3 415 84.1
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 3.6e-201 704.9 412 82.5
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 4.0e-200 701.4 415 82.9
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 8.9e-200 700.3 415 81.7
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 1.2e-196 689.9 415 81.7
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 7.8e-196 687.2 415 81.4
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 1.1e-194 683.3 416 81.5
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 4.4e-191 671.4 413 78.5
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 1.3e-187 659.8 417 78.7
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 2.5e-186 655.6 415 79.5
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 4.3e-170 601.7 365 79.5
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 3.0e-163 578.9 417 70.0
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 3.8e-134 482.3 411 58.6
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 5.0e-134 481.9 410 58.5
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 6.5e-134 481.5 408 59.3
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 1.9e-133 479.9 410 58.3
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 7.2e-133 478.0 410 58.0
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 1.8e-131 473.4 420 58.1
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 4.0e-131 472.2 418 56.2
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 5.7e-130 468.4 419 56.1
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 1.7e-129 466.8 410 57.6
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 4.8e-129 465.3 420 57.1
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 5.9e-127 458.4 422 55.7
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 5.9e-127 458.4 414 57.2
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 3.8e-126 455.7 444 54.7
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 5.0e-126 455.3 414 55.3
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 8.5e-126 454.5 413 56.9
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 3.2e-125 452.6 413 55.9
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 1.2e-124 450.7 415 54.9
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 4.0e-123 445.7 408 55.9
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 8.8e-123 444.5 417 55.6
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 2.6e-122 443.0 419 53.7
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 4.4e-122 442.2 410 55.9
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 7.5e-122 441.4 418 54.5
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 4.9e-121 438.7 429 56.2
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 7.0e-120 434.9 414 52.2
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 7.0e-120 434.9 418 55.3
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 5.9e-119 431.8 419 52.3
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 1.7e-118 430.3 414 53.4
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 3.8e-118 429.1 436 53.7
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 5.0e-118 428.7 414 52.9
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 8.6e-118 427.9 419 56.1
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 1.5e-117 427.2 422 53.8
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.5e-117 427.2 442 50.2
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.5e-117 427.2 442 50.2
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 4.3e-117 425.6 412 50.7
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 4.3e-117 425.6 414 55.3
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 9.5e-117 424.5 421 50.6
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 9.5e-117 424.5 416 54.8
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 9.5e-117 424.5 429 52.0
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 1.2e-116 424.1 422 53.1
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.6e-116 423.7 426 54.2
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 1.6e-116 423.7 417 54.2
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 2.1e-116 423.3 423 53.7
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 2.8e-116 422.9 410 54.4
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 4.7e-116 422.2 416 55.8
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 1.4e-115 420.6 423 52.7
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 1.8e-115 420.2 414 51.0
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 1.8e-115 420.2 543 45.9
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 5.2e-115 418.7 425 52.5
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 2.6e-114 416.4 322 63.0
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 3.4e-114 416.0 422 53.1
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 4.4e-114 415.6 420 50.7
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 7.5e-114 414.8 418 50.7
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 9.8e-114 414.5 417 53.2
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 9.8e-114 414.5 422 54.3
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 6.4e-113 411.8 421 53.0
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 1.1e-112 411.0 433 48.7
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 1.2e-111 407.5 467 50.3
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.6e-111 407.1 462 48.1
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 1.1e-109 401.0 401 52.6
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 7.3e-109 398.3 419 47.5
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 1.2e-106 391.0 413 49.4
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.1e-104 384.4 426 50.9
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 5.4e-104 382.1 439 48.3
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 3.0e-102 376.3 362 54.4
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 6.6e-102 375.2 417 47.2
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.5e-101 374.0 442 48.0
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 2.0e-98 363.6 378 51.1
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 1.7e-97 360.5 374 51.6
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 2.1e-95 353.6 397 46.3
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 2.3e-94 350.1 375 49.9
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 3.9e-94 349.4 418 44.3
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 3.3e-93 346.3 352 49.7
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 1.6e-92 344.0 435 44.6
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 1.2e-90 337.8 435 44.8
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 4.1e-88 329.3 430 44.2
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 3.9e-86 322.8 331 49.5
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 1.5e-85 320.9 362 47.2
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 7.3e-85 318.5 352 52.6
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 2.6e-82 310.1 420 42.6
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 1.4e-80 304.3 164 86.0
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 2.4e-80 303.5 284 51.4
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.9e-77 293.9 387 40.8
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 5.1e-70 269.2 342 44.2
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 3.1e-67 260.0 344 47.1
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 1.8e-59 234.2 325 41.8
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.6e-58 230.3 327 41.3
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 7.1e-56 222.2 189 53.4
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 4.6e-47 193.0 388 31.7
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 5.7e-45 186.0 221 43.4
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.1e-43 181.8 220 50.0
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 5.5e-40 169.5 220 44.5
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 4.7e-23 113.2 95 57.9
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 2.8e-20 104.0 151 47.0
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 4.2e-16 90.1 64 57.8
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 1.6e-15 88.2 156 36.5
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 2.6e-13 80.9 147 38.1
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 3.1e-11 73.9 195 27.7
BolC8t49566H Brassica oleracea HOM05D040593 ORTHO05D033422 1.6e-07 61.6 34 76.5
BcaB03g14451 Brassica carinata HOM05D000817 ORTHO05D000702 1.8e-06 58.2 27 85.2
BcaC07g41261 Brassica carinata HOM05D000817 ORTHO05D000702 4.0e-06 57.0 29 75.9
C08p42630 Brassica napus HOM05D000817 ORTHO05D000702 4.0e-06 57.0 29 75.9
BolC8t51824H Brassica oleracea HOM05D000817 ORTHO05D000702 4.0e-06 57.0 29 75.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.0e-06 57.0 49 57.1


User provided reference genes

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