Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 8.2e-266 919.8 472 100.0
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 3.6e-253 877.9 472 94.5
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 3.4e-235 818.1 472 89.0
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 4.4e-235 817.8 476 88.9
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 5.7e-235 817.4 468 89.1
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 4.1e-233 811.2 472 87.9
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 5.4e-233 810.8 469 88.5
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 5.4e-233 810.8 470 88.5
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 7.0e-233 810.4 467 88.4
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 3.5e-232 808.1 471 87.7
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 4.6e-232 807.7 468 88.0
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 4.6e-232 807.7 468 88.0
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 4.7e-229 797.7 469 87.4
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 3.2e-225 785.0 469 86.6
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.6e-224 782.7 470 84.7
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.7e-223 779.2 470 84.5
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 3.4e-219 765.0 483 82.2
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 7.5e-219 763.8 472 85.0
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 1.9e-214 749.2 400 92.5
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 1.9e-214 749.2 400 92.5
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.2e-213 746.5 400 92.0
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 2.9e-210 735.3 430 87.4
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.7e-202 709.5 472 80.5
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 5.8e-195 684.5 450 76.2
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 9.3e-193 677.2 471 73.0
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.8e-167 593.2 481 62.6
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.3e-165 587.0 463 63.5
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.3e-165 587.0 457 65.0
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 6.3e-165 584.7 463 63.3
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 5.3e-164 581.6 426 65.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.3e-164 581.6 426 65.3
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 9.1e-164 580.9 408 68.6
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 2.0e-163 579.7 474 62.9
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.0e-163 579.7 407 68.1
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.6e-163 579.3 426 65.0
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.0e-162 577.4 406 67.7
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 2.2e-162 576.2 462 61.7
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-161 573.2 442 63.1
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.9e-161 573.2 472 61.2
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.2e-160 570.5 400 68.2
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 7.9e-160 567.8 451 62.7
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 7.9e-160 567.8 409 68.7
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.0e-159 567.4 405 67.2
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.8e-159 566.6 463 62.2
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.0e-159 565.8 472 61.7
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 3.9e-159 565.5 400 68.8
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 6.7e-159 564.7 408 67.2
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.8e-159 564.3 406 68.2
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.8e-159 564.3 462 63.0
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 2.0e-158 563.1 403 66.3
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 3.3e-158 562.4 406 66.7
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 4.4e-158 562.0 398 69.1
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.7e-158 561.6 400 68.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.3e-157 560.5 399 67.2
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 1.7e-157 560.1 477 61.0
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 6.3e-157 558.1 397 67.8
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.1e-156 557.4 400 68.5
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.1e-156 557.4 403 66.5
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 2.4e-156 556.2 413 65.6
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 5.3e-156 555.1 449 61.7
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 6.9e-156 554.7 399 67.7
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.5e-155 553.5 402 65.9
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 4.5e-155 552.0 396 67.4
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.0e-154 550.8 438 63.0
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.2e-154 549.7 391 67.0
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 5.0e-154 548.5 402 64.7
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 5.0e-154 548.5 445 62.0
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 8.5e-154 547.7 366 68.9
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-153 547.4 415 64.8
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 2.5e-153 546.2 366 69.1
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.2e-153 545.4 407 63.9
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 7.2e-153 544.7 447 62.2
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 3.6e-152 542.3 401 66.1
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.0e-152 541.2 447 62.0
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.0e-151 540.8 401 65.8
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.8e-151 540.0 516 56.4
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 6.7e-151 538.1 366 68.3
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.1e-150 537.3 418 64.6
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 1.1e-150 537.3 366 68.0
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.0e-150 536.6 355 70.4
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 2.6e-150 536.2 406 64.0
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 4.4e-150 535.4 385 66.5
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.3e-149 533.9 371 69.0
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.7e-149 533.5 387 66.1
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.1e-148 530.8 356 70.2
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.8e-148 530.0 373 66.2
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 3.1e-148 529.3 472 56.6
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 5.3e-148 528.5 406 62.8
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 7.0e-148 528.1 472 56.6
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.2e-147 527.3 368 65.8
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 7.7e-147 524.6 371 66.3
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 8.5e-146 521.2 404 62.6
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 1.1e-145 520.8 485 54.6
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.5e-145 520.4 357 66.9
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 3.2e-145 519.2 406 62.3
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 2.7e-144 516.2 362 66.0
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.6e-142 509.6 540 51.1
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.8e-141 506.1 427 59.7
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.8e-141 505.4 333 70.3
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 6.3e-141 505.0 352 67.6
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 4.1e-140 502.3 528 50.6
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 5.0e-138 495.4 406 62.1
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.5e-137 493.8 373 64.6
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.2e-136 490.7 344 66.9
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.2e-136 490.7 344 66.9
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 1.2e-136 490.7 329 69.6
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 6.1e-136 488.4 414 59.4
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.8e-135 486.9 403 60.0
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.2e-135 485.3 333 68.8
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 2.6e-134 483.0 476 54.6
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 9.8e-134 481.1 472 55.3
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.3e-130 469.9 367 61.0
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 2.8e-128 463.0 443 50.6
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.8e-127 460.3 421 55.6
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.4e-126 455.7 404 60.1
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.7e-126 455.3 401 60.8
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.3e-125 451.8 430 55.1
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.3e-125 451.4 297 69.0
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.1e-124 451.1 461 52.7
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 5.9e-123 445.3 411 55.2
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 2.9e-122 443.0 353 58.6
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 1.5e-121 440.7 395 56.2
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 5.8e-118 428.7 303 66.3
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.9e-116 423.7 365 51.8
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.7e-115 419.9 353 59.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.3e-114 416.8 369 55.3
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 8.0e-112 408.3 399 52.6
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.4e-108 397.5 371 52.0
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.9e-108 397.1 248 73.0
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.1e-104 383.6 283 67.5
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 7.1e-100 368.6 217 77.0
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 9.2e-100 368.2 255 69.0
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 8.6e-98 361.7 283 62.9
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.4e-87 327.0 206 72.8
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 3.5e-75 286.6 378 39.4
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 6.7e-66 255.8 331 41.4
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 4.3e-65 253.1 394 38.3
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.0e-61 241.9 177 66.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.2e-45 187.6 176 52.3
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 5.1e-42 176.4 218 51.4
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.5e-33 148.3 98 67.3
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.6e-30 137.5 85 72.9
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 3.5e-22 110.5 77 68.8
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 8.0e-19 99.4 95 49.5
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.8e-18 98.2 68 63.2
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 2.6e-17 94.4 108 46.3
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 1.7e-16 91.7 79 65.8
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 2.4e-15 87.8 92 44.6
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.7e-14 82.8 55 65.5
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.7e-14 82.8 55 65.5
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.7e-14 82.8 55 65.5
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.3e-13 81.3 55 63.6
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 6.6e-13 79.7 54 64.8
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.1e-12 79.0 54 61.1
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 3.5e-06 57.4 32 71.9
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 5.9e-06 56.6 53 54.7


User provided reference genes

Program Settings