Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10007497m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 6.2e-277 956.8 485 100.0
Sp1g10800 Schrenkiella parvula HOM05D009328 ORTHO05D008690 6.3e-221 770.8 492 83.7
Carub.0001s1181 Capsella rubella HOM05D009328 ORTHO05D008690 1.6e-203 713.0 500 78.2
AL1G23390 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 1.7e-202 709.5 500 78.4
AT1G12120 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 1.2e-190 670.2 500 75.8
CARHR012480 Cardamine hirsuta HOM05D009328 ORTHO05D008690 1.2e-174 617.1 513 70.8
BcaC07g41729 Brassica carinata HOM05D009328 ORTHO05D008690 1.5e-166 590.1 484 69.2
A08p32980 Brassica napus HOM05D009328 ORTHO05D008690 3.2e-164 582.4 488 68.4
BraA08t35218Z Brassica rapa HOM05D009328 ORTHO05D008690 3.2e-164 582.4 488 68.2
BcaB03g13206 Brassica carinata HOM05D009328 ORTHO05D008690 9.3e-164 580.9 491 68.0
C08p15230 Brassica napus HOM05D009328 ORTHO05D008690 1.2e-163 580.5 489 68.3
BolC8t49153H Brassica oleracea HOM05D009328 ORTHO05D008690 1.2e-163 580.5 489 68.3
BcaB02g06406 Brassica carinata HOM05D009328 ORTHO05D008690 3.3e-161 572.4 484 68.6
BraA06t24123Z Brassica rapa HOM05D009328 ORTHO05D008690 3.3e-161 572.4 488 66.6
C05p11050 Brassica napus HOM05D009328 ORTHO05D008690 1.2e-158 563.9 488 66.6
BolC5t29847H Brassica oleracea HOM05D009328 ORTHO05D008690 2.6e-158 562.8 488 66.8
A06p09350 Brassica napus HOM05D009328 ORTHO05D008690 3.4e-158 562.4 489 66.5
A09p64080 Brassica napus HOM05D009328 ORTHO05D008690 2.9e-157 559.3 483 67.1
BraA09t41754Z Brassica rapa HOM05D009328 ORTHO05D008690 1.4e-156 557.0 483 67.3
C08p47680 Brassica napus HOM05D009328 ORTHO05D008690 4.1e-151 538.9 486 65.0
BolC8t52307H Brassica oleracea HOM05D009328 ORTHO05D008690 5.9e-150 535.0 485 64.9
BcaB02g06408 Brassica carinata HOM05D009328 ORTHO05D008690 2.2e-144 516.5 460 66.1
Aa31LG1G2600 Aethionema arabicum HOM05D009328 ORTHO05D008690 8.3e-104 381.7 537 50.8
THA.LOC104823548 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.1e-100 371.3 513 50.3
THA.LOC104818527 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 6.6e-93 345.5 519 47.2
BcaNung05495 Brassica carinata HOM05D009328 ORTHO05D008690 6.8e-90 335.5 347 59.1
Sp2g02060 Schrenkiella parvula HOM05D009328 ORTHO05D008690 6.2e-67 259.2 298 54.7
Thhalv10024007m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 3.6e-59 233.4 481 38.7
Carub.0002s0245 Capsella rubella HOM05D009328 ORTHO05D008690 7.1e-55 219.2 493 38.5
AT1G62530 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 3.3e-52 210.3 482 37.6
AL2G13340 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 3.7e-51 206.8 484 37.0
BcaNung05497 Brassica carinata HOM05D009328 ORTHO05D008690 5.1e-29 133.3 150 52.7
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 5.1e-29 133.3 306 35.3
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 1.8e-26 124.8 300 35.7
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 1.5e-25 121.7 287 35.2
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 2.6e-25 120.9 288 34.7
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 3.4e-25 120.6 291 34.7
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 5.9e-25 119.8 285 34.7
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 1.3e-24 118.6 289 35.6
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 3.8e-24 117.1 305 32.5
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 1.1e-23 115.5 188 43.1
Haze_07866 Corylus avellana HOM05D007929 ORTHO05D008690 1.4e-23 115.2 306 36.3
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 3.2e-23 114.0 189 43.4
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 9.4e-23 112.5 296 34.8
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 9.4e-23 112.5 275 36.4
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 9.4e-23 112.5 321 32.4
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 2.1e-22 111.3 282 35.8
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 2.7e-22 110.9 272 32.0
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 4.7e-22 110.2 305 31.1
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 7.9e-22 109.4 371 30.5
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 7.9e-22 109.4 305 30.8
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 1.0e-21 109.0 183 41.0
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 1.8e-21 108.2 188 42.0
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 2.3e-21 107.8 268 34.3
Hma1.2p1_1720F.1_g299295 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 2.3e-21 107.8 178 43.8
Hma1.2p1_1720F.1_g299300 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 2.3e-21 107.8 178 43.8
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 3.9e-21 107.1 292 32.2
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 3.9e-21 107.1 282 32.6
Gohir.D12G221300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 5.1e-21 106.7 292 32.2
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 5.1e-21 106.7 358 31.0
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 6.7e-21 106.3 293 30.4
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 6.7e-21 106.3 285 33.3
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 8.8e-21 105.9 354 31.1
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 8.8e-21 105.9 165 43.0
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 1.1e-20 105.5 307 32.9
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 1.1e-20 105.5 272 36.4
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 1.5e-20 105.1 270 34.1
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 2.6e-20 104.4 184 41.8
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 3.3e-20 104.0 276 34.8
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 3.3e-20 104.0 191 39.3
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 4.4e-20 103.6 272 35.7
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 5.7e-20 103.2 377 28.4
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 9.7e-20 102.4 268 31.7
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 9.7e-20 102.4 268 31.7
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 2.2e-19 101.3 297 33.0
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 8.2e-19 99.4 262 35.1
FAN04G0968 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.4e-18 98.6 268 33.6
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 1.8e-18 98.2 274 34.7
DCAR_027794 Daucus carota HOM05D007929 ORTHO05D008690 1.5e-17 95.1 234 34.6
EL10Ac5g13019 Beta vulgaris HOM05D007929 ORTHO05D008690 3.5e-17 94.0 116 49.1
AUR62039940 Chenopodium quinoa HOM05D007929 ORTHO05D008690 7.7e-17 92.8 175 40.0
Lsat_1_v5_gn_6_1860 Lactuca sativa HOM05D007929 ORTHO05D008690 1.7e-16 91.7 161 46.0
HanXRQChr13g0394961 Helianthus annuus HOM05D007929 ORTHO05D008690 3.8e-16 90.5 196 39.3
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 1.1e-15 89.0 123 47.2
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 1.4e-15 88.6 177 40.1
ECA233G5449 Erigeron canadensis HOM05D007929 ORTHO05D008690 2.5e-15 87.8 198 40.9
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 2.5e-15 87.8 191 38.7
Ah.12g056550 Amaranthus hybridus HOM05D007929 ORTHO05D008690 5.5e-15 86.7 185 38.4
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 7.2e-15 86.3 131 45.8
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 9.4e-15 85.9 254 32.3
AUR62007484 Chenopodium quinoa HOM05D007929 ORTHO05D008690 1.6e-14 85.1 336 28.6
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 1.6e-14 85.1 240 32.1
Sopen08g027490 Solanum pennellii HOM05D007929 ORTHO05D008690 4.7e-14 83.6 307 31.9
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 1.4e-13 82.0 179 38.0
Solyc08g079030.4 Solanum lycopersicum HOM05D007929 ORTHO05D008690 2.3e-13 81.3 306 31.0
arahy.Tifrunner.gnm1.ann1.S80PKI Arachis hypogaea HOM05D007929 ORTHO05D008690 5.2e-13 80.1 183 39.9
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 5.2e-13 80.1 272 32.7
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 1.5e-12 78.6 234 33.8
PGSC0003DMG400004743 Solanum tuberosum HOM05D007929 ORTHO05D008690 2.6e-12 77.8 273 30.0
MSTRG.25535 Avicennia marina HOM05D007929 ORTHO05D008690 3.7e-11 73.9 290 30.3
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 3.7e-11 73.9 328 28.7
Migut.A00812 Erythranthe guttata HOM05D007929 ORTHO05D008690 1.2e-09 68.9 351 29.1
Cc08_g12850 Coffea canephora HOM05D007929 ORTHO05D008690 5.9e-09 66.6 218 29.4
Actinidia04855 Actinidia chinensis HOM05D001536 ORTHO05D001442 6.5e-08 63.2 311 24.8
Dinv38763 Davidia involucrata HOM05D001536 ORTHO05D001442 6.5e-08 63.2 170 30.6
MD17G1054900 Malus domestica HOM05D001536 ORTHO05D001442 8.5e-08 62.8 155 34.2
Gorai.003G099300 Gossypium raimondii HOM05D001536 ORTHO05D001442 3.2e-07 60.8 82 40.2
Actinidia09237 Actinidia chinensis HOM05D000001 ORTHO05D000003 9.4e-07 59.3 168 30.4
HPP92_007417 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.2e-06 58.9 227 29.1
HPP92_015027 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.2e-06 58.9 253 29.2
Hma1.2p1_0060F.1_g033420 Hydrangea macrophylla HOM05D001536 ORTHO05D001442 2.7e-06 57.8 179 29.6
Lj4g0023409 Lotus japonicus HOM05D001536 ORTHO05D001442 2.7e-06 57.8 206 30.6
Hund25198 Selenicereus undatus HOM05D001536 ORTHO05D001442 2.7e-06 57.8 201 26.4
Gohir.A03G068500 Gossypium hirsutum HOM05D001536 ORTHO05D001442 3.6e-06 57.4 82 39.0
CiPaw.06G089900 Carya illinoinensis HOM05D001536 ORTHO05D001442 4.7e-06 57.0 204 28.4
GSVIVG01007938001 Vitis vinifera HOM05D001536 ORTHO05D001442 4.7e-06 57.0 97 40.2
GSVIVG01011481001 Vitis vinifera HOM05D001536 ORTHO05D001442 4.7e-06 57.0 83 38.6
CiPaw.05G128200 Carya illinoinensis HOM05D001536 ORTHO05D001442 6.1e-06 56.6 211 28.4
Thhalv10006734m.g Eutrema salsugineum HOM05D001536 ORTHO05D001442 6.1e-06 56.6 85 37.6
HanXRQChr15g0477041 Helianthus annuus HOM05D001536 ORTHO05D001442 6.1e-06 56.6 253 29.6
Gohir.D03G095100 Gossypium hirsutum HOM05D001536 ORTHO05D001442 8.0e-06 56.2 82 39.0
PGR004G1789 Punica granatum HOM05D001536 ORTHO05D001442 8.0e-06 56.2 190 28.4
vmacro17582 Vaccinium macrocarpon HOM05D001536 ORTHO05D001442 8.0e-06 56.2 220 27.7


User provided reference genes

Program Settings