Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 2.0e-122 444.1 713 100.0
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 1.7e-65 255.0 463 82.1
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 5.9e-58 229.9 277 59.9
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 1.3e-57 228.8 276 58.7
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 1.7e-57 228.4 276 58.3
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 1.1e-56 225.7 277 62.8
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 1.6e-50 205.3 167 70.7
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 2.7e-50 204.5 166 70.5
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-44 185.7 192 56.8
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 1.0e-41 176.0 163 65.6
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-41 174.9 149 63.1
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.9e-41 174.1 185 56.8
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.9e-41 174.1 160 62.5
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.9e-41 174.1 160 62.5
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.6e-40 170.2 161 59.6
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.6e-40 170.2 193 52.3
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.2e-39 166.8 193 54.4
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.4e-38 165.6 193 53.9
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-38 164.9 178 56.7
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-38 164.9 178 56.7
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 6.8e-38 163.3 149 58.4
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.0e-37 161.8 181 54.7
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.0e-37 161.8 181 54.7
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.6e-37 161.4 136 60.3
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.4e-36 156.8 152 59.2
Carub.0007s1279 Capsella rubella HOM05D006694 ORTHO05D008240 3.3e-32 144.4 132 63.6
Aa31sc233G10 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.4e-27 128.3 175 48.6
Aa31LG5G21690 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.4e-22 111.7 147 47.6
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 2.4e-22 111.7 184 41.3
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 1.2e-21 109.4 171 40.9
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 1.2e-21 109.4 167 42.5
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 2.0e-21 108.6 150 45.3
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 4.4e-21 107.5 152 42.8
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 5.8e-21 107.1 154 40.3
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.3e-20 105.9 158 41.1
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 3.8e-20 104.4 158 40.5
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.8e-20 104.4 158 40.5
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.1e-19 102.8 162 38.9
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.1e-19 102.8 154 41.6
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.1e-19 102.8 158 39.9
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.9e-19 102.1 159 41.5
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.1e-19 100.9 168 41.1
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.1e-19 100.9 168 41.1
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 9.2e-19 99.8 172 38.4
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 2.1e-18 98.6 161 37.9
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 2.1e-18 98.6 154 38.3
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.7e-18 98.2 178 36.5
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 3.5e-18 97.8 157 38.9
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 6.0e-18 97.1 156 39.7
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 6.0e-18 97.1 162 38.3
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 7.8e-18 96.7 158 39.2
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 7.8e-18 96.7 156 39.7
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 1.0e-17 96.3 165 40.0
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 1.3e-17 95.9 171 38.0
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 1.3e-17 95.9 157 37.6
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 2.3e-17 95.1 145 39.3
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.3e-17 95.1 154 38.3
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 3.0e-17 94.7 153 39.2
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 3.0e-17 94.7 148 41.2
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 3.9e-17 94.4 157 37.6
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 1.9e-16 92.0 146 37.0
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.9e-16 92.0 162 35.8
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 3.3e-16 91.3 146 37.0
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 4.3e-16 90.9 179 33.5
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 4.3e-16 90.9 163 37.4
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 5.6e-16 90.5 133 40.6
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 7.3e-16 90.1 105 45.7
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 9.6e-16 89.7 151 37.7
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 1.2e-15 89.4 148 37.2
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 2.8e-15 88.2 144 38.9
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 3.6e-15 87.8 145 37.2
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 4.7e-15 87.4 130 44.6
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 6.2e-15 87.0 147 35.4
BcaB07g33547 Brassica carinata HOM05D006694 ORTHO05D014504 1.1e-14 86.3 76 57.9
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 1.8e-14 85.5 145 35.9
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 2.4e-14 85.1 153 37.3
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 3.1e-14 84.7 97 45.4
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 6.9e-14 83.6 144 36.1
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 6.9e-14 83.6 129 38.0
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 2.0e-13 82.0 159 35.2
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.4e-13 81.3 151 33.8
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 3.4e-13 81.3 145 32.4
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 2.2e-12 78.6 145 33.8
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 2.9e-12 78.2 106 40.6
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.9e-12 78.2 131 37.4
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 8.4e-12 76.6 84 47.6
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 5.4e-11 73.9 57 64.9
BcaC01g03454 Brassica carinata HOM05D012099 ORTHO05D014504 4.6e-10 70.9 66 56.1
C03p32380 Brassica napus HOM05D012099 ORTHO05D014504 3.0e-09 68.2 47 70.2
C07p23600 Brassica napus HOM05D012099 ORTHO05D014504 3.0e-09 68.2 47 70.2
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.1e-08 66.2 126 35.7
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 1.5e-08 65.9 76 47.4
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.3e-08 64.3 137 32.8
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 4.3e-08 64.3 139 31.7
BolC2t07316H Brassica oleracea HOM05D012099 ORTHO05D014504 1.6e-07 62.4 42 71.4
BolC9t53522H Brassica oleracea HOM05D012099 ORTHO05D014504 1.6e-07 62.4 42 71.4
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 2.8e-07 61.6 87 37.9
ATR0697G204 Amborella trichopoda HOM05D006694 ORTHO05D008240 8.1e-07 60.1 122 35.2
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 3.1e-06 58.2 74 40.5


User provided reference genes

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