Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 0.0e+00 1339.3 733 100.0
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 3.0e-259 898.7 736 72.8
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.1e-227 793.9 741 67.3
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 2.0e-226 789.6 739 67.7
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.1e-223 779.6 737 68.1
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 7.8e-223 777.7 747 65.9
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.6e-222 774.6 741 67.6
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 2.2e-209 733.0 751 63.1
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 2.0e-202 709.9 747 63.3
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 4.6e-199 698.7 690 66.5
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 1.3e-196 690.6 750 60.8
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.0e-193 681.0 752 61.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.6e-181 639.8 772 55.7
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.5e-178 630.6 763 53.3
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 6.8e-142 508.8 767 52.0
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 9.0e-110 402.1 623 49.1
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 4.1e-62 243.8 484 41.9
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.8e-57 228.4 776 31.8
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 7.4e-56 223.0 770 31.6
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.3e-52 212.2 759 31.5
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.3e-52 212.2 822 30.5
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.7e-52 211.8 775 30.5
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 5.0e-52 210.3 765 30.5
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.5e-51 208.8 785 29.3
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.9e-51 208.4 771 31.3
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.2e-51 207.6 778 30.5
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 2.7e-50 204.5 786 28.6
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 3.6e-50 204.1 795 29.4
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 3.0e-49 201.1 797 30.9
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 4.0e-49 200.7 789 30.8
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 2.0e-48 198.4 769 30.3
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 4.8e-47 193.7 755 29.0
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 8.2e-47 193.0 883 29.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-46 192.2 852 28.9
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 5.3e-46 190.3 840 28.9
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.6e-45 188.7 924 28.5
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 2.7e-45 188.0 775 29.4
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 5.9e-45 186.8 907 28.9
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 5.9e-45 186.8 745 29.1
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 8.5e-44 183.0 781 30.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.1e-43 182.6 851 29.8
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 7.2e-43 179.9 806 29.2
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.6e-42 177.6 160 63.1
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 3.6e-42 177.6 763 28.2
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 4.7e-42 177.2 761 28.1
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.1e-42 176.8 762 29.3
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.1e-42 176.8 762 29.3
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 6.8e-41 173.3 756 29.8
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 4.4e-40 170.6 925 26.7
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 9.8e-40 169.5 815 28.3
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 2.8e-39 167.9 749 28.4
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.4e-38 165.6 767 28.9
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 3.1e-38 164.5 754 30.1
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 5.9e-37 160.2 735 28.7
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 8.6e-36 156.4 764 28.9
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 4.2e-35 154.1 844 27.1
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 7.2e-35 153.3 748 28.3
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 7.2e-35 153.3 735 27.5
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 9.5e-35 152.9 733 26.6
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.6e-34 152.1 789 28.3
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 2.3e-33 148.3 842 26.1
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 3.0e-33 147.9 770 26.9
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 4.0e-33 147.5 772 28.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 6.8e-33 146.7 780 27.2
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 8.9e-33 146.4 747 27.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 8.9e-33 146.4 849 27.7
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.2e-32 146.0 775 26.6
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.4e-32 144.4 670 29.4
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 3.4e-32 144.4 674 28.2
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 5.7e-32 143.7 758 25.1
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.2e-31 141.7 353 34.3
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 3.7e-31 141.0 751 26.6
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 4.9e-31 140.6 357 36.1
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.4e-30 139.0 789 27.0
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.8e-30 138.7 865 26.4
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.1e-30 137.9 781 27.8
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.1e-30 137.5 741 27.1
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 5.4e-30 137.1 751 26.2
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 7.0e-30 136.7 718 26.9
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 7.0e-30 136.7 734 27.1
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.2e-29 136.0 748 26.7
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.7e-29 134.8 673 28.8
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 4.5e-29 134.0 787 27.8
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 7.8e-29 133.3 662 27.9
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 3.8e-28 131.0 702 25.6
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 8.6e-28 129.8 724 26.5
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.1e-27 129.4 746 25.7
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 4.3e-27 127.5 661 27.2
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.6e-27 127.1 778 27.8
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.6e-27 127.1 809 26.7
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 2.3e-25 121.7 942 25.7
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.1e-25 121.3 771 28.0
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.1e-25 121.3 357 32.5
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 8.9e-25 119.8 98 62.2
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.9e-23 114.8 803 26.5
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 3.7e-23 114.4 804 25.5
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 4.9e-23 114.0 763 26.2
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.4e-22 112.5 780 26.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 4.1e-22 110.9 838 24.9
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 9.2e-22 109.8 764 26.4
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.2e-21 109.4 938 26.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.0e-21 107.1 743 26.4
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.3e-20 105.1 722 26.3
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.9e-20 104.4 95 57.9
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.9e-20 104.4 86 62.8
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 6.6e-20 103.6 74 68.9
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.5e-19 102.4 690 26.1
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 1.5e-19 102.4 510 27.8
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.9e-19 102.1 586 26.3
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 4.3e-19 100.9 584 27.7
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 9.5e-19 99.8 551 28.9
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.6e-18 99.0 783 25.4
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.6e-18 99.0 804 25.5
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 1.1e-17 96.3 95 57.9
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.4e-17 95.9 364 29.7
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 2.3e-17 95.1 683 24.7
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 3.1e-17 94.7 90 53.3
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 3.1e-17 94.7 725 24.6
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 9.8e-16 89.7 925 22.2
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 9.8e-16 89.7 89 52.8
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 2.4e-14 85.1 757 24.3
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 3.2e-14 84.7 94 51.1
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.2e-13 82.8 936 22.6
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 2.1e-13 82.0 86 50.0
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 4.6e-13 80.9 95 52.6
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.0e-12 79.7 952 22.7
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 2.3e-12 78.6 754 23.7
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 6.6e-12 77.0 100 44.0
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.1e-11 76.3 819 23.8
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.5e-11 75.9 98 46.9
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.5e-11 75.9 96 49.0
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.6e-11 73.9 82 48.8
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 7.3e-11 73.6 679 22.5
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.2e-10 72.8 654 25.2
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.2e-10 72.8 46 73.9
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 2.3e-09 68.6 378 26.5
MCO08G035 Micromonas commoda HOM05D004831 ORTHO05D003975 2.6e-08 65.1 66 54.5
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 7.5e-08 63.5 752 21.9
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 3.7e-07 61.2 144 33.3
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 1.1e-06 59.7 60 51.7


User provided reference genes

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