Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 0.0e+00 1304.7 805 100.0
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 0.0e+00 1163.3 811 87.1
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 0.0e+00 1146.3 808 83.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 0.0e+00 1118.6 812 82.9
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 0.0e+00 1118.2 813 84.3
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 0.0e+00 1114.8 814 85.0
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 0.0e+00 1112.1 808 84.2
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 0.0e+00 1110.5 814 84.9
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 0.0e+00 1102.8 810 83.5
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 0.0e+00 1095.1 806 84.0
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 2.4e-310 1068.5 808 82.7
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 3.9e-308 1061.2 807 76.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 8.5e-287 990.3 935 64.8
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.7e-271 939.5 817 69.8
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.4e-257 893.3 744 71.6
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 7.3e-230 801.2 829 64.7
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 8.0e-229 797.7 805 56.6
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.1e-225 787.3 816 60.5
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.3e-223 779.6 831 58.7
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.5e-222 776.9 828 55.3
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 9.5e-222 774.2 827 57.4
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.2e-221 773.9 817 56.8
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.1e-221 773.1 841 54.8
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 6.2e-221 771.5 831 55.6
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.0e-219 766.5 817 56.4
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.7e-218 762.3 825 56.2
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 1.4e-217 760.4 815 55.8
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.4e-217 760.4 822 58.0
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.0e-215 754.2 808 58.7
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.8e-213 746.1 866 54.0
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.6e-213 745.7 829 54.4
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.8e-212 743.4 832 56.7
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 2.3e-212 743.0 812 55.3
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 8.9e-212 741.1 813 57.1
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 8.9e-212 741.1 830 55.8
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.5e-211 740.3 843 56.8
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 5.8e-211 738.4 848 53.9
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.8e-210 735.7 831 57.3
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 9.2e-209 731.1 821 55.9
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 4.6e-208 728.8 819 57.5
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.3e-207 727.2 831 56.7
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 3.0e-207 726.1 805 55.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.9e-207 725.7 808 57.5
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.6e-207 724.9 831 56.2
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 8.6e-207 724.5 814 60.1
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.5e-206 723.8 820 56.5
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.9e-206 723.4 816 52.2
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 2.5e-206 723.0 825 56.1
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 9.6e-206 721.1 812 54.1
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 9.6e-206 721.1 813 57.9
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 6.2e-205 718.4 825 53.7
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.4e-204 716.5 844 59.2
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 6.9e-204 714.9 821 55.1
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.5e-203 713.8 811 56.4
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.0e-203 713.4 821 52.0
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 5.8e-203 711.8 812 53.8
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.2e-201 705.7 833 54.7
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.2e-200 704.1 830 57.7
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.6e-200 703.7 800 56.5
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.1e-200 703.4 802 51.5
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.7e-200 703.0 819 53.4
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.5e-200 702.6 833 54.1
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.3e-199 700.7 791 56.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 5.1e-199 698.7 813 55.6
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 8.7e-199 698.0 835 55.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.1e-198 697.6 825 53.3
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.9e-198 696.8 825 53.1
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 3.3e-198 696.0 831 54.8
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.3e-198 695.7 817 54.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.6e-198 695.3 822 52.1
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.1e-197 693.3 820 57.1
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.1e-197 693.3 841 51.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 3.6e-197 692.6 812 51.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 4.8e-197 692.2 816 52.5
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 8.1e-197 691.4 848 52.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.1e-196 691.0 812 57.1
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 5.3e-196 688.7 828 54.5
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 6.9e-196 688.3 839 53.4
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.0e-195 686.8 812 56.0
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 4.5e-195 685.6 809 52.2
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 9.9e-195 684.5 815 52.3
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-194 683.3 823 51.3
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 3.8e-194 682.6 821 51.9
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 3.5e-192 676.0 808 55.9
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 4.8e-189 665.6 843 49.1
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 8.1e-189 664.8 814 55.8
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.2e-187 661.0 814 51.2
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.0e-187 660.2 814 51.4
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 7.6e-187 658.3 818 52.1
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 9.9e-187 657.9 512 81.1
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.5e-185 652.1 826 49.9
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 9.3e-185 651.4 769 52.8
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 7.9e-184 648.3 812 54.6
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.7e-183 645.2 797 49.4
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.1e-181 640.2 815 50.2
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 5.3e-180 635.6 708 59.2
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.5e-179 634.0 878 49.2
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.2e-178 630.2 807 51.9
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-176 623.6 821 48.0
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 6.7e-175 618.6 778 54.2
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.7e-163 578.6 830 43.5
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 6.1e-160 568.9 799 47.8
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.0e-150 537.3 665 51.7
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 4.1e-148 529.6 826 44.4
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 4.7e-144 516.2 816 45.2
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 5.7e-142 509.2 806 42.2
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 7.7e-139 498.8 825 45.9
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.6e-136 491.1 805 40.6
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.6e-136 490.0 805 40.6
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-135 488.0 805 40.7
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 1.8e-127 461.1 565 58.2
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.8e-127 461.1 842 38.2
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.4e-124 451.4 445 55.5
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.7e-123 447.2 644 50.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 5.2e-119 433.0 695 44.6
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.7e-115 420.6 738 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.8e-111 407.9 733 42.0
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 6.4e-109 399.4 883 41.4
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.9e-108 397.9 468 61.1
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 9.2e-108 395.6 524 50.0
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.1e-107 394.4 469 57.4
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.6e-104 384.8 852 36.4
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 4.0e-103 380.2 419 59.7
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 9.2e-100 369.0 557 50.6
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 6.9e-87 326.2 356 53.4
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.0e-82 312.4 312 53.5
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 2.8e-80 304.3 795 35.5
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 1.8e-79 301.6 529 38.9
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.5e-78 298.5 823 35.0
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.4e-77 292.7 251 60.6
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.0e-74 284.3 508 43.5
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 2.4e-71 274.6 466 38.0
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 2.6e-70 271.2 519 35.1
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.1e-68 265.8 905 33.6
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 8.4e-61 239.6 450 37.1
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 2.8e-56 224.6 134 88.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.7e-48 197.6 356 52.5
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 6.9e-47 193.4 229 48.9
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.4e-44 185.7 383 45.4
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 7.2e-44 183.3 780 26.2
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 4.5e-38 164.1 159 58.5
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.0e-37 162.9 136 61.0
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 2.5e-36 158.3 98 85.7
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 3.2e-36 157.9 96 85.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-35 156.0 393 33.8
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.4e-31 141.7 306 36.3
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.3e-31 140.6 327 34.9
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.6e-27 129.0 138 53.6
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.8e-24 118.2 126 54.8
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.9e-22 110.5 127 51.2
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 1.6e-19 102.4 59 88.1
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.0e-18 98.2 102 56.9
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.2e-18 97.4 85 57.6
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-17 95.9 80 61.2
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.7e-17 94.0 78 62.8
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-16 92.8 341 30.8
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.9e-14 84.0 76 57.9
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-13 82.0 284 34.9
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.6e-13 80.1 80 55.0
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-12 77.8 295 28.1
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.2e-12 77.0 152 40.8
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 9.5e-12 76.6 44 77.3
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.6e-11 75.9 72 55.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-11 74.7 252 31.3
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.0e-10 71.2 163 35.0
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 5.2e-10 70.9 45 84.4
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-09 69.3 155 34.2
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-09 68.9 80 47.5
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.4e-09 68.2 65 55.4
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 7.5e-09 67.0 216 29.6
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 9.8e-09 66.6 122 40.2
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 2.2e-08 65.5 51 68.6
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.1e-07 63.2 49 71.4
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.8e-07 62.4 121 38.8
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 1.8e-07 62.4 37 78.4
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.2e-07 60.1 129 38.8
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.2e-06 59.7 57 57.9
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-06 58.9 120 35.8
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 7.8e-06 57.0 55 52.7
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 7.8e-06 57.0 82 40.2


User provided reference genes

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