Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 0.0e+00 1623.6 829 100.0
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 0.0e+00 1375.5 839 82.8
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1346.6 839 82.4
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1345.9 838 82.3
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1316.6 837 80.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1315.4 836 82.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 0.0e+00 1278.8 835 79.0
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1275.0 836 77.9
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1268.8 835 77.8
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 0.0e+00 1259.6 811 80.8
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1250.0 836 76.3
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1250.0 836 76.3
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 0.0e+00 1238.0 834 75.9
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 0.0e+00 1224.5 834 75.2
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 0.0e+00 1141.7 843 70.3
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 0.0e+00 1109.0 714 79.1
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 5.5e-281 971.1 859 60.0
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 3.6e-224 782.3 850 49.3
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.7e-221 772.3 862 49.9
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 4.6e-219 765.4 869 49.4
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.3e-217 758.8 872 49.9
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.6e-216 756.9 893 49.4
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.4e-214 748.8 865 48.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.3e-213 747.3 898 48.7
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.7e-213 745.7 903 46.8
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 1.2e-211 740.7 878 48.4
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 3.5e-211 739.2 1000 43.1
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.3e-210 737.3 825 47.9
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.1e-208 729.9 930 44.3
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.8e-207 726.9 856 47.5
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 6.8e-207 724.9 895 47.8
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 4.4e-206 722.2 807 49.8
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 7.5e-206 721.5 874 47.6
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 6.2e-200 701.8 739 50.7
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.3e-194 683.3 995 42.8
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 5.1e-194 682.2 997 41.0
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 5.6e-193 678.7 848 46.1
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 4.7e-192 675.6 982 41.8
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 9.9e-190 667.9 891 44.2
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.7e-189 667.2 871 46.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.7e-189 667.2 1031 43.1
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.2e-187 661.0 1070 38.7
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 6.0e-187 658.7 923 42.3
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 7.8e-187 658.3 897 44.4
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.9e-185 653.7 887 43.5
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 5.6e-185 652.1 907 43.8
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 7.3e-185 651.7 961 39.4
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 3.1e-183 646.4 1059 40.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.5e-182 644.0 854 43.6
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 2.6e-182 643.3 715 48.0
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 4.5e-182 642.5 882 44.6
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 5.8e-182 642.1 913 42.9
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 7.6e-182 641.7 929 40.9
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 9.9e-182 641.3 898 42.0
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 6.4e-181 638.6 1012 38.6
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 8.4e-181 638.3 895 41.1
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.9e-180 637.1 868 43.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 9.3e-180 634.8 923 40.8
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 3.5e-179 632.9 922 40.7
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.8e-178 630.6 1062 38.8
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 2.3e-178 630.2 806 44.7
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.5e-177 627.5 1015 41.5
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.1e-175 621.3 1017 37.3
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.8e-175 620.5 939 40.5
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.8e-175 620.5 939 40.5
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 4.2e-172 609.4 962 41.7
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.5e-172 609.0 1056 37.9
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 5.5e-172 609.0 966 39.5
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.2e-171 607.8 886 41.8
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 2.7e-171 606.7 1068 37.2
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 5.1e-170 602.4 946 42.9
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.9e-169 600.5 831 43.0
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 4.3e-169 599.4 1053 36.5
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 9.6e-169 598.2 1039 37.7
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.8e-168 596.7 978 36.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.1e-167 594.7 1097 35.5
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.4e-167 593.6 897 40.4
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.5e-166 590.9 892 40.4
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.2e-165 587.0 1038 38.8
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.2e-164 583.2 897 39.4
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 7.1e-164 582.0 1015 36.7
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 4.3e-161 572.8 823 42.2
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 4.1e-159 566.2 1064 35.6
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 3.4e-158 563.1 926 39.2
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 4.5e-158 562.8 906 40.5
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.3e-157 561.2 816 41.5
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 6.5e-157 558.9 1136 33.7
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 5.5e-156 555.8 1012 34.8
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 7.2e-156 555.4 902 38.9
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 6.7e-154 548.9 838 40.8
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-153 547.4 1075 35.7
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 3.8e-149 533.1 836 42.0
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 8.5e-149 531.9 1081 33.9
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.6e-147 526.2 802 41.5
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 4.6e-147 526.2 668 45.7
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 4.4e-145 519.6 597 47.6
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.2e-142 511.5 735 43.4
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 3.9e-138 496.5 997 35.0
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 6.5e-133 479.2 831 34.9
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 8.0e-131 472.2 657 42.3
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 9.7e-129 465.3 819 36.4
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.7e-128 464.5 1193 29.6
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-125 454.9 798 36.8
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 3.6e-123 446.8 933 35.2
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 5.0e-117 426.4 636 42.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.0e-114 418.7 792 35.4
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.9e-112 409.8 672 39.7
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 2.0e-110 404.4 503 41.7
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 7.3e-108 396.0 360 53.3
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 7.8e-102 375.9 514 42.2
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.8e-98 364.8 331 55.3
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 1.2e-97 362.1 745 32.9
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.9e-95 354.8 752 33.6
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 3.9e-93 347.1 741 32.5
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 5.8e-73 280.0 535 37.0
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-66 259.2 310 45.8
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 5.3e-50 203.8 324 42.9
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.2e-49 202.6 628 29.1
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.7e-48 198.7 297 39.4
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.2e-48 198.4 292 41.1
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.2e-48 198.4 437 34.1
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 8.4e-48 196.4 225 47.6
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-47 195.3 226 47.8
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.2e-47 194.5 332 33.1
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.7e-45 186.4 236 44.9
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 5.9e-41 173.7 131 57.3
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.1e-36 159.5 214 43.9
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.7e-35 155.6 212 44.8
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 2.6e-33 148.3 190 39.5
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 2.9e-32 144.8 103 60.2
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-31 142.9 218 38.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-29 136.3 241 45.2
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.1e-26 126.3 215 40.0
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.8e-26 125.6 341 30.5
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 7.7e-25 120.2 312 30.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.0e-24 119.8 228 36.0
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.7e-24 119.0 217 35.5
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 5.5e-23 114.0 185 38.9
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-22 112.5 101 50.5
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 5.7e-20 104.0 196 37.2
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.0e-16 93.2 120 47.5
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 6.5e-16 90.5 112 42.0
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.7e-14 85.1 531 23.4
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 8.8e-13 80.1 191 30.9
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.2e-12 79.7 110 38.2
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 1.8e-10 72.4 146 34.9
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 4.1e-10 71.2 139 33.8
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.3e-08 66.2 51 52.9


User provided reference genes

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