Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 0.0e+00 1700.3 846 100.0
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 0.0e+00 1438.3 1003 74.6
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 0.0e+00 1434.1 1004 74.7
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 0.0e+00 1396.3 885 80.0
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 0.0e+00 1374.4 1004 71.5
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 0.0e+00 1372.5 1004 71.4
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 0.0e+00 1364.4 1005 70.9
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 0.0e+00 1358.2 1005 70.9
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 0.0e+00 1318.9 1004 68.5
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 0.0e+00 1105.5 1002 57.9
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 2.4e-276 955.7 710 69.7
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.9e-274 948.3 723 67.9
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 2.5e-228 796.2 1015 42.0
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 1.6e-227 793.5 994 43.7
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 3.1e-223 779.2 1016 42.4
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 3.3e-217 759.2 1038 41.5
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.8e-215 753.4 1000 42.7
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 4.1e-215 752.3 1002 41.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 6.7e-210 734.9 957 42.0
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 3.7e-208 729.2 1016 40.8
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 1.6e-206 723.8 978 41.8
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 4.5e-206 722.2 1008 40.1
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 5.0e-205 718.8 1006 40.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.2e-203 714.1 1004 40.5
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.6e-203 713.8 957 41.3
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 5.2e-202 708.8 1021 39.9
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.7e-202 708.4 1007 39.5
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 8.8e-202 708.0 998 39.6
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.1e-201 707.6 1013 39.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.1e-201 707.6 994 40.0
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 4.4e-201 705.7 1001 39.1
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.1e-199 699.5 1008 39.6
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 4.8e-192 675.6 1012 37.9
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 2.4e-191 673.3 1008 37.9
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 1.0e-189 667.9 1007 37.6
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.6e-187 659.4 1004 38.1
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 1.0e-186 657.9 1003 37.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 5.2e-186 655.6 1016 37.7
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 2.6e-185 653.3 1002 38.3
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 6.3e-184 648.7 1000 36.9
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.1e-183 647.9 1005 37.6
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 1.2e-182 644.4 1010 37.0
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 2.7e-182 643.3 995 36.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 4.5e-182 642.5 1012 36.2
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 7.7e-182 641.7 977 38.0
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 2.9e-181 639.8 996 37.0
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.1e-180 637.9 1012 35.7
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 2.1e-179 633.6 1011 36.8
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 6.1e-179 632.1 1002 36.1
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 3.7e-176 622.9 1004 36.8
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.1e-175 621.3 971 36.9
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.4e-175 620.9 1000 37.1
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 4.1e-175 619.4 1000 36.5
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.0e-173 614.8 866 39.4
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.5e-172 610.9 1001 34.7
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 6.2e-171 605.5 937 38.3
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 1.0e-170 604.7 1014 36.2
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 3.1e-170 603.2 1017 36.8
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 8.9e-170 601.7 977 35.0
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 6.4e-168 595.5 1014 35.6
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.6e-166 590.9 1005 35.0
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.0e-161 573.9 996 34.4
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 2.6e-161 573.5 879 38.1
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 4.4e-161 572.8 980 34.3
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.4e-159 567.0 1004 34.3
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.0e-157 561.6 838 37.1
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 4.3e-156 556.2 1001 33.2
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.7e-155 552.7 888 35.5
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.4e-154 551.2 940 34.8
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 4.4e-153 546.2 921 34.0
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 1.7e-152 544.3 1123 31.4
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 5.6e-148 529.3 995 32.8
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 7.3e-148 528.9 874 38.7
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 1.8e-146 524.2 1008 33.6
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.0e-145 520.8 812 38.3
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.0e-142 509.2 886 34.7
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.5e-140 504.6 750 38.5
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 3.9e-133 479.9 866 34.1
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 2.4e-127 460.7 688 40.0
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.1e-122 445.3 744 34.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 2.6e-121 440.7 922 33.2
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 5.8e-121 439.5 852 32.3
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.5e-118 430.3 826 33.5
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 6.7e-117 426.0 751 34.6
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-116 425.2 434 48.4
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.5e-113 413.3 464 45.9
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 4.5e-113 413.3 835 32.2
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-111 408.7 425 48.2
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 8.7e-109 399.1 241 85.1
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 7.4e-108 396.0 990 30.3
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.8e-93 348.2 368 48.9
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 6.7e-93 346.3 382 45.5
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.5e-92 345.1 835 29.2
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 2.8e-83 314.3 848 29.1
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.7e-78 297.7 366 44.8
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 8.8e-69 266.2 734 27.2
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 7.8e-65 253.1 198 54.5
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.3e-64 251.5 313 39.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.9e-55 221.9 157 73.9
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.3e-55 220.7 193 51.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 4.7e-54 217.2 252 42.9
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 7.5e-52 209.9 217 49.8
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 9.2e-50 203.0 455 30.1
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 1.4e-45 189.1 440 30.5
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.6e-44 184.9 393 33.6
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 7.5e-44 183.3 139 59.0
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 9.9e-44 183.0 441 30.4
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 4.9e-43 180.6 157 63.7
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.4e-42 179.1 357 34.2
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.0e-40 171.4 158 50.6
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 7.3e-39 166.8 140 54.3
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.8e-37 162.2 175 45.1
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.0e-37 161.0 194 44.8
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 2.7e-25 121.7 148 41.2
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.9e-24 117.9 148 41.2
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 1.9e-23 115.5 92 54.3
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.6e-23 114.0 134 42.5
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 9.9e-20 103.2 113 46.0
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 8.7e-16 90.1 86 52.3
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 6.2e-14 84.0 168 29.8
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.0e-12 79.0 96 38.5
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 2.5e-07 62.0 57 49.1
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 7.4e-07 60.5 67 46.3
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 1.3e-06 59.7 47 53.2
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 2.8e-06 58.5 124 29.0
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 8.2e-06 57.0 54 51.9


User provided reference genes

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