Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.2e-114 414.1 201 100.0
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.2e-114 414.1 201 100.0
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.9e-95 352.1 201 88.1
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.1e-93 344.4 201 87.1
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.5e-86 322.4 216 76.9
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.5e-80 302.0 209 72.2
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 4.7e-77 291.6 215 69.3
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.0e-76 290.4 215 69.8
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.8e-76 289.7 215 68.8
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 4.0e-76 288.5 207 70.5
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 4.0e-76 288.5 212 70.3
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.3e-74 283.5 210 67.6
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 6.3e-74 281.2 207 69.6
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.4e-73 279.3 213 67.1
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.4e-73 279.3 213 67.1
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 3.1e-73 278.9 214 65.9
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 3.1e-73 278.9 214 65.9
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 5.3e-73 278.1 213 66.7
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 7.0e-73 277.7 208 69.2
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.0e-72 276.2 216 65.3
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.0e-72 276.2 216 65.3
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.0e-72 276.2 216 65.3
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 3.5e-72 275.4 214 65.4
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.0e-68 263.8 211 63.0
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 6.8e-68 261.2 215 62.3
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.0e-60 237.3 222 54.1
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.4e-60 236.9 219 54.8
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 8.9e-60 234.2 220 57.7
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.5e-59 233.4 217 53.5
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.0e-59 233.0 219 54.3
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 9.8e-59 230.7 220 55.5
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.2e-58 229.6 220 54.1
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.2e-58 229.6 220 55.5
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 8.3e-58 227.6 216 53.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.8e-57 226.5 219 55.3
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 2.4e-57 226.1 215 54.4
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 3.1e-57 225.7 226 54.9
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 7.0e-57 224.6 219 53.0
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 2.7e-56 222.6 214 51.9
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 2.7e-56 222.6 216 56.0
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.3e-55 220.3 214 52.3
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 2.3e-55 219.5 220 54.5
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.5e-54 216.9 214 50.5
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.5e-54 216.9 214 50.5
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.5e-54 216.1 214 50.0
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 2.5e-54 216.1 207 54.6
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 2.5e-54 216.1 224 51.8
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.3e-54 215.7 209 52.2
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.3e-54 215.7 219 52.5
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 3.3e-54 215.7 219 50.7
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 4.3e-54 215.3 212 52.4
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 5.6e-54 214.9 219 49.3
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.3e-54 214.5 219 52.5
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 9.5e-54 214.2 215 51.2
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 9.5e-54 214.2 218 51.8
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 9.5e-54 214.2 214 50.9
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.2e-53 213.8 218 51.4
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.2e-53 213.8 214 50.9
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.6e-53 213.4 219 51.6
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.6e-53 213.4 214 51.9
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 2.1e-53 213.0 211 52.6
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 2.1e-53 213.0 219 50.7
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 2.8e-53 212.6 216 49.1
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.6e-53 212.2 223 52.5
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 6.1e-53 211.5 219 49.3
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 8.0e-53 211.1 218 50.9
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.4e-52 210.3 223 49.3
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.3e-52 209.5 219 50.2
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 3.1e-52 209.1 212 52.4
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 4.0e-52 208.8 232 47.0
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 4.0e-52 208.8 220 50.0
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 5.2e-52 208.4 217 50.2
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 6.8e-52 208.0 201 50.2
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 8.9e-52 207.6 217 49.8
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 8.9e-52 207.6 220 50.9
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.2e-51 207.2 220 50.9
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 2.0e-51 206.5 201 52.7
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 2.6e-51 206.1 214 48.1
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.4e-51 205.3 223 47.1
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 5.8e-51 204.9 220 48.6
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 7.5e-51 204.5 217 49.3
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 7.5e-51 204.5 211 50.2
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.3e-50 203.8 195 53.3
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 2.2e-50 203.0 212 47.2
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.9e-50 202.6 220 50.0
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 3.7e-50 202.2 208 49.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 4.9e-50 201.8 213 48.4
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 8.3e-50 201.1 202 49.0
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.4e-49 200.3 223 50.2
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.4e-49 200.3 217 48.4
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.9e-49 199.9 213 46.0
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 1.9e-49 199.9 219 48.9
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 3.2e-49 199.1 217 47.9
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 9.2e-49 197.6 223 48.4
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.0e-48 196.4 201 50.7
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.7e-48 196.1 221 48.0
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 6.0e-48 194.9 196 51.0
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 6.0e-48 194.9 210 50.0
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.5e-46 190.3 213 46.9
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 4.3e-46 188.7 232 44.8
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 5.6e-46 188.3 227 48.9
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.2e-45 187.2 193 50.3
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.1e-45 186.4 219 44.3
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.8e-45 186.0 219 44.3
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 8.0e-45 184.5 188 51.1
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 3.1e-44 182.6 211 44.5
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 3.4e-43 179.1 175 48.6
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 3.4e-43 179.1 207 47.8
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.2e-40 170.6 216 44.4
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 6.0e-40 168.3 170 50.0
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 3.9e-39 165.6 249 39.0
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.6e-38 161.8 220 41.8
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.6e-37 160.2 284 35.2
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.0e-35 153.3 215 37.7
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 9.9e-35 151.0 213 38.5
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 2.5e-30 136.3 217 34.1
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 6.2e-29 131.7 166 42.8
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 5.2e-28 128.6 130 51.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.5e-27 127.1 201 36.8
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 5.8e-27 125.2 93 62.4
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.4e-26 121.7 201 36.8
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 4.6e-24 115.5 76 68.4
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 6.0e-24 115.2 116 53.4
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 8.1e-21 104.8 131 46.6
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 2.4e-20 103.2 142 41.5
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 6.9e-20 101.7 129 48.8
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 9.0e-20 101.3 235 26.8
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 2.6e-19 99.8 96 45.8
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.9e-18 96.3 134 39.6
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 4.6e-16 89.0 126 40.5
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 1.7e-15 87.0 104 49.0
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.0e-15 86.3 57 61.4
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 1.9e-14 83.6 132 37.9
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.6e-14 82.0 48 72.9
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 5.3e-12 75.5 230 24.8
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 6.9e-12 75.1 38 78.9
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 5.8e-11 72.0 133 35.3
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 6.4e-10 68.6 65 49.2
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 7.1e-09 65.1 38 68.4
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 9.3e-09 64.7 100 38.0
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.0e-07 61.2 97 38.1
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 1.9e-06 57.0 38 63.2
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 1.9e-06 57.0 38 63.2
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.3e-06 56.2 30 73.3
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 5.6e-06 55.5 33 66.7


User provided reference genes

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