Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.8e-240 833.2 412 100.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 9.5e-226 786.6 412 93.2
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 2.2e-222 775.4 412 91.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.1e-221 773.1 412 91.5
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 3.2e-221 771.5 412 91.3
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 3.2e-221 771.5 412 91.3
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 3.2e-221 771.5 412 91.3
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.6e-220 769.2 412 91.7
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.6e-220 767.7 410 91.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 8.6e-219 763.5 412 91.0
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.5e-210 735.3 410 87.1
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.7e-206 722.6 412 85.9
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.4e-192 676.4 412 80.6
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.8e-184 649.4 414 77.8
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.3e-177 626.7 412 73.8
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 6.2e-177 624.4 412 73.8
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.2e-177 624.4 412 73.8
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 2.0e-175 619.4 412 72.6
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 5.8e-175 617.8 412 72.3
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 6.5e-174 614.4 412 71.6
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 4.2e-173 611.7 412 71.8
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.1e-172 609.4 412 72.1
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.7e-172 609.0 402 73.4
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.7e-172 609.0 412 71.4
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 4.6e-172 608.2 411 72.3
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.0e-172 607.8 402 73.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.0e-172 607.8 408 73.0
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.3e-171 605.9 411 72.0
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.3e-171 605.9 411 72.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 3.0e-171 605.5 416 72.4
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 5.1e-171 604.7 412 71.1
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 8.7e-171 604.0 413 70.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.1e-170 603.6 406 72.4
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.5e-170 603.2 412 71.8
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.9e-170 602.8 412 70.4
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.5e-170 602.4 412 71.6
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.3e-170 602.1 412 70.1
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.3e-170 601.7 412 70.9
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 4.3e-170 601.7 412 70.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 5.7e-170 601.3 412 71.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.3e-169 600.1 412 69.7
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 3.7e-169 598.6 406 71.9
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.7e-169 598.6 412 69.4
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 8.2e-169 597.4 412 72.3
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.4e-168 596.7 412 67.5
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.3e-168 594.7 406 70.7
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 9.0e-168 594.0 412 72.1
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.0e-168 594.0 406 70.7
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 4.5e-167 591.7 412 71.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.9e-166 589.0 412 68.0
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.1e-165 587.0 412 67.7
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 3.2e-165 585.5 412 70.1
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 4.2e-165 585.1 412 71.1
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 9.3e-165 583.9 412 70.4
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.6e-164 581.6 412 68.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 4.6e-164 581.6 411 68.6
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 4.6e-164 581.6 409 68.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 7.9e-164 580.9 409 68.9
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.3e-163 580.1 406 69.5
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.3e-163 580.1 409 68.9
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 3.0e-163 578.9 406 70.2
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.0e-163 578.9 412 68.7
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 3.9e-163 578.6 410 70.0
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 5.1e-163 578.2 414 67.6
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.1e-162 577.0 412 68.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.9e-162 576.2 411 68.4
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.9e-162 576.2 406 69.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 4.3e-162 575.1 412 68.2
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.4e-162 574.3 412 70.4
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.3e-161 573.5 406 68.0
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.6e-161 573.2 411 69.1
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 2.2e-161 572.8 413 68.0
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 2.2e-161 572.8 411 68.6
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 2.8e-161 572.4 411 65.7
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.8e-161 571.6 412 66.5
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 4.8e-161 571.6 406 68.0
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.3e-161 571.2 412 68.0
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 8.2e-161 570.9 407 68.1
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.1e-160 570.5 412 67.0
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.4e-160 570.1 406 68.7
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.8e-160 569.7 406 68.2
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 5.3e-160 568.2 412 69.2
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.3e-160 568.2 415 68.7
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.0e-159 566.2 412 66.7
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.0e-159 566.2 407 68.6
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 7.7e-159 564.3 407 68.3
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.0e-158 563.9 406 67.5
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.9e-158 562.4 412 68.7
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 6.5e-158 561.2 412 66.0
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.1e-157 560.5 405 66.9
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.4e-157 560.1 405 66.9
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.9e-157 559.7 412 66.5
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.5e-157 559.3 412 67.2
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 7.2e-157 557.8 412 65.8
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.2e-156 557.0 427 65.6
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.6e-156 556.6 413 67.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.7e-156 555.8 406 67.7
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 7.9e-156 554.3 407 67.1
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.9e-155 552.0 409 67.0
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 5.1e-155 551.6 406 65.8
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 8.8e-155 550.8 443 63.7
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.1e-154 550.4 409 66.7
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.3e-154 548.9 409 64.5
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.3e-153 547.0 409 64.5
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 8.5e-150 534.3 406 66.3
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 3.6e-148 528.9 408 63.5
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.5e-146 523.5 492 56.1
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 8.2e-145 517.7 355 70.4
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.4e-144 516.2 410 60.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 7.0e-144 514.6 412 62.9
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-143 513.8 364 68.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.7e-142 510.0 412 62.6
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.1e-140 503.1 409 59.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 6.1e-140 501.5 354 68.6
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.4e-139 500.4 412 60.2
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.8e-139 500.0 409 58.9
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 8.8e-139 497.7 411 58.4
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.1e-133 480.7 317 74.1
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.4e-133 477.6 407 57.0
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.3e-131 473.0 412 57.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-127 460.7 406 56.4
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.0e-123 447.6 317 67.8
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.4e-122 442.6 416 52.9
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 3.0e-115 419.5 273 72.2
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 3.2e-112 409.5 381 55.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 4.0e-107 392.5 317 58.4
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 9.8e-106 387.9 416 46.4
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 4.9e-105 385.6 411 47.2
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.6e-103 380.6 273 66.3
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 6.4e-97 358.6 424 46.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.6e-95 352.4 413 51.6
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 6.2e-92 342.0 271 63.1
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 9.9e-90 334.7 412 44.2
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 4.6e-79 299.3 257 61.5
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.3e-76 291.2 443 39.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 4.0e-67 259.6 176 71.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 5.3e-67 259.2 161 77.6
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.7e-62 241.9 217 54.8
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 5.6e-61 239.2 177 67.2
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 3.4e-58 229.9 177 62.7
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 3.4e-58 229.9 165 65.5
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.6e-55 221.1 135 78.5
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 5.7e-53 212.6 344 37.5
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 4.1e-51 206.5 169 59.2
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.0e-50 204.1 189 56.1
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.2e-49 200.7 106 86.8
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 2.5e-45 187.2 101 88.1
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.8e-30 137.9 93 69.9
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 6.1e-23 112.8 98 64.3
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.4e-19 101.7 70 70.0
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 3.1e-19 100.5 322 26.7
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 4.2e-16 90.1 88 56.8
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.3e-12 78.6 57 63.2


User provided reference genes

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