Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 6.5e-188 660.6 339 100.0
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 7.9e-170 600.5 350 90.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.0e-169 600.1 347 89.6
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 7.4e-168 594.0 350 88.9
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.2e-165 586.6 350 86.6
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 3.8e-164 581.6 344 87.5
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.7e-156 556.2 350 82.3
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.2e-154 550.1 346 82.7
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.7e-154 548.1 351 80.6
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.0e-153 547.0 343 83.4
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 8.8e-153 543.9 345 82.9
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.2e-152 543.5 351 81.5
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.5e-152 543.1 351 81.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.5e-152 543.1 345 81.7
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 3.3e-152 542.0 351 80.6
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 2.2e-151 539.3 345 82.0
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 2.8e-151 538.9 345 82.0
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 6.3e-151 537.7 343 82.2
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 8.2e-151 537.3 340 81.2
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.1e-150 535.0 345 82.0
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.0e-148 530.4 343 80.5
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.7e-148 529.6 344 81.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.5e-147 525.8 336 81.2
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 4.2e-147 525.0 336 81.5
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 2.1e-146 522.7 336 81.2
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 3.0e-137 492.3 341 73.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 7.5e-136 487.6 335 77.0
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.8e-136 487.3 341 73.9
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.8e-136 487.3 341 73.9
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.1e-134 483.8 276 85.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-134 483.8 341 72.4
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.1e-134 483.8 276 85.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.4e-134 483.4 322 75.2
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.8e-134 483.0 304 77.3
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 9.2e-134 480.7 276 85.5
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.2e-134 480.7 341 72.7
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.2e-133 480.3 322 75.2
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.0e-132 477.2 295 80.7
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.3e-132 476.9 342 73.4
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 2.3e-132 476.1 296 80.1
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 5.0e-132 474.9 276 84.1
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-131 473.8 336 72.0
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 2.5e-131 472.6 295 79.7
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 4.3e-131 471.9 276 83.0
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 9.5e-131 470.7 275 82.9
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.5e-131 470.7 297 78.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.6e-130 469.9 299 77.9
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.1e-130 469.5 276 84.1
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.1e-130 469.5 300 76.7
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 2.1e-130 469.5 275 82.5
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 8.0e-130 467.6 322 73.0
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.4e-129 466.8 276 82.6
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-128 463.8 334 71.6
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.5e-128 463.4 276 80.4
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.5e-128 463.4 276 81.5
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 2.6e-128 462.6 313 74.4
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.6e-128 462.6 276 81.5
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 9.8e-128 460.7 347 70.6
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.2e-127 459.5 329 74.2
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 2.2e-127 459.5 276 80.8
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 2.2e-127 459.5 303 75.6
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 2.2e-127 459.5 347 70.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.9e-127 459.1 277 81.9
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.4e-126 456.8 277 81.2
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.4e-126 456.8 346 69.4
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 1.9e-126 456.4 346 69.1
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.2e-126 454.1 311 72.0
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 9.2e-126 454.1 277 80.1
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 9.2e-126 454.1 276 80.1
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 9.2e-126 454.1 276 80.4
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.2e-125 453.8 347 67.7
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.6e-125 453.4 276 80.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.7e-125 452.6 346 68.5
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.7e-125 452.6 337 68.0
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.6e-125 451.8 306 72.5
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 4.6e-125 451.8 299 75.3
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 7.8e-125 451.1 316 72.8
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 7.8e-125 451.1 346 69.4
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.0e-124 450.7 277 78.0
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.7e-124 449.9 330 70.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.0e-124 449.1 277 79.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 3.0e-124 449.1 274 79.6
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 3.0e-124 449.1 346 68.2
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.9e-124 448.7 275 79.6
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 8.6e-124 447.6 277 79.1
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.9e-123 446.4 274 78.8
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.9e-123 446.4 346 68.5
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.3e-123 445.3 329 70.2
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 4.3e-123 445.3 277 78.0
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 9.5e-123 444.1 346 66.8
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.1e-122 443.0 277 78.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.8e-122 442.6 292 73.6
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.6e-122 442.2 350 67.4
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 4.7e-122 441.8 289 76.1
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 4.7e-122 441.8 294 72.8
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.8e-121 439.9 276 76.8
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.3e-121 439.5 276 78.6
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 3.1e-121 439.1 350 66.6
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 3.1e-121 439.1 276 77.2
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 3.1e-121 439.1 316 70.9
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 5.2e-121 438.3 278 76.6
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 8.9e-121 437.6 276 76.1
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.9e-121 437.6 338 65.7
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.2e-120 437.2 276 76.4
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 4.4e-120 435.3 345 67.0
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.7e-119 432.2 325 67.1
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 3.7e-119 432.2 276 75.7
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 4.9e-119 431.8 278 74.8
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.9e-118 429.9 305 69.8
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.4e-118 429.5 304 71.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 4.1e-118 428.7 274 76.6
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.1e-118 428.7 298 70.8
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.1e-117 426.4 265 78.5
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.0e-116 424.1 304 70.7
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.3e-116 423.7 282 71.3
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.3e-116 423.7 310 67.4
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 2.3e-116 422.9 336 66.1
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.5e-115 420.2 327 67.6
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 4.3e-115 418.7 274 73.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-114 417.2 254 79.9
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.8e-114 416.0 274 72.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-113 414.1 256 78.9
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 2.3e-113 412.9 274 72.6
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.6e-112 409.5 289 68.5
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.6e-112 409.5 337 64.4
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.4e-112 409.1 289 68.2
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.1e-110 404.1 275 73.8
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 4.1e-110 402.1 321 65.1
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 6.6e-108 394.8 263 73.4
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.1e-107 394.0 255 73.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 7.3e-107 391.3 299 64.9
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 6.2e-106 388.3 306 65.4
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 8.1e-106 387.9 316 63.3
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 4.0e-105 385.6 298 66.8
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 8.9e-105 384.4 315 61.3
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.6e-98 363.6 294 66.0
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.6e-93 347.1 274 61.7
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 2.1e-93 346.7 224 74.1
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 6.0e-93 345.1 298 59.1
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 2.8e-90 336.3 325 54.2
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.0e-88 330.1 186 83.9
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 8.1e-82 308.1 305 54.8
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.4e-80 302.8 207 73.9
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 7.6e-80 301.6 246 63.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 9.9e-80 301.2 305 52.1
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.3e-76 290.8 189 75.1
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 8.7e-76 288.1 273 50.2
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.4e-73 280.8 288 53.5
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 9.3e-70 268.1 322 55.0
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.0e-68 263.1 239 61.1
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 7.4e-67 258.5 218 63.3
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 3.4e-64 249.6 174 72.4
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.6e-61 239.6 224 59.4
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.8e-58 229.2 159 70.4
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.2e-56 224.6 123 86.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 9.1e-49 198.4 175 61.1
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 2.0e-48 197.2 188 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.8e-42 176.8 193 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.7e-37 159.5 138 60.1
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 8.0e-37 158.7 90 81.1
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 9.1e-33 145.2 77 87.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.2e-31 140.6 280 32.5
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.7e-26 124.4 89 70.8
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.2e-24 118.2 75 76.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.7e-24 117.1 68 82.4
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.3e-23 114.0 152 44.7
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.6e-23 112.5 164 41.5
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.5e-19 101.3 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.6e-15 85.9 83 53.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.4e-12 78.2 179 32.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 6.4e-10 69.3 81 46.9
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.3e-06 56.6 31 80.6


User provided reference genes

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