Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 7.6e-131 471.1 354 100.0
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 3.0e-119 432.6 354 91.8
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 3.0e-119 432.6 354 93.5
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 8.7e-119 431.0 354 85.0
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 2.5e-118 429.5 354 82.8
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 2.1e-117 426.4 354 78.5
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 6.2e-117 424.9 354 83.6
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 9.9e-115 417.5 378 73.8
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 1.7e-114 416.8 354 90.7
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 1.3e-109 400.6 354 75.1
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 3.9e-103 379.0 355 71.0
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 3.7e-93 345.9 347 67.7
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 2.6e-91 339.7 354 72.3
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 5.5e-89 332.0 346 52.6
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 9.4e-89 331.3 345 65.2
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 4.7e-88 328.9 353 68.8
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 4.7e-88 328.9 354 70.9
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 7.9e-88 328.2 347 61.1
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 7.9e-88 328.2 347 59.4
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 1.0e-87 327.8 350 71.7
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.0e-87 327.8 350 71.7
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 5.1e-87 325.5 354 70.3
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.1e-86 324.3 350 71.1
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 5.7e-86 322.0 345 70.4
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 7.4e-86 321.6 354 60.2
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 7.4e-86 321.6 354 70.3
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 9.7e-86 321.2 350 70.6
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 9.7e-86 321.2 347 71.2
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 9.7e-86 321.2 332 73.8
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.2e-85 320.1 356 70.5
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 3.7e-85 319.3 353 67.4
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 1.8e-84 317.0 346 70.5
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 4.1e-84 315.8 297 90.9
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.0e-82 311.2 352 69.0
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 4.2e-81 305.8 358 68.2
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 4.7e-80 302.4 361 67.3
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 8.0e-80 301.6 346 68.5
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.0e-79 301.2 354 67.8
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 5.2e-79 298.9 350 68.0
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 2.6e-78 296.6 362 72.1
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 8.2e-77 291.6 277 74.4
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.4e-76 290.8 371 65.0
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 2.4e-76 290.0 356 66.3
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 5.3e-76 288.9 348 67.2
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 4.5e-75 285.8 348 73.3
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 5.9e-75 285.4 278 78.4
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 5.9e-75 285.4 352 66.2
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.0e-74 284.6 277 91.7
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.3e-74 284.3 346 66.5
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.8e-74 282.7 346 67.9
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 3.2e-73 279.6 277 91.3
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 3.2e-73 279.6 332 63.3
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 5.5e-73 278.9 355 57.2
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.8e-71 273.9 332 75.9
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 2.3e-71 273.5 351 72.1
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 6.7e-71 271.9 353 64.9
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 1.5e-70 270.8 357 70.3
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 2.0e-70 270.4 355 63.9
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 2.6e-70 270.0 356 63.5
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 3.3e-70 269.6 353 64.0
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 5.7e-70 268.9 337 46.9
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 9.7e-70 268.1 283 76.3
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 1.4e-68 264.2 377 60.5
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 7.0e-68 261.9 347 64.8
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 5.0e-66 255.8 283 73.9
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.1e-65 254.6 284 71.8
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 3.2e-65 253.1 404 41.1
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 3.2e-65 253.1 404 41.1
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 1.2e-64 251.1 362 42.3
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 1.8e-63 247.3 344 55.8
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 2.0e-62 243.8 344 62.5
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 3.4e-62 243.0 350 60.9
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 4.4e-62 242.7 357 61.9
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 4.4e-62 242.7 344 59.0
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 7.5e-62 241.9 344 62.5
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 1.7e-61 240.7 281 72.2
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 3.7e-61 239.6 349 62.5
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.1e-60 238.0 348 67.5
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.1e-60 238.0 348 67.5
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 1.8e-60 237.3 347 56.8
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 3.1e-60 236.5 344 61.6
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 9.1e-60 235.0 337 53.1
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.3e-58 231.1 284 62.3
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 5.5e-57 225.7 277 61.0
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.6e-56 224.2 335 43.0
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 1.8e-55 220.7 356 57.9
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 3.0e-55 219.9 399 47.1
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 1.7e-53 214.2 323 54.5
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 2.4e-52 210.3 347 38.6
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 2.7e-51 206.8 339 57.5
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 4.5e-51 206.1 342 60.2
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 2.5e-49 200.3 139 69.1
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 5.6e-49 199.1 284 60.2
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.6e-48 197.6 352 57.7
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 2.8e-48 196.8 151 66.9
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 4.7e-48 196.1 347 43.2
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.2e-46 191.4 344 55.5
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 8.3e-45 185.3 296 69.6
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 7.0e-44 182.2 288 63.9
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 6.6e-42 175.6 258 69.0
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 8.0e-40 168.7 247 69.2
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 4.6e-35 152.9 417 30.5
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 3.0e-34 150.2 407 47.7
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 2.1e-32 144.1 347 47.6
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 4.6e-27 126.3 123 52.8
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 6.6e-26 122.5 131 67.2
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 1.1e-25 121.7 87 63.2
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 4.7e-24 116.3 280 54.6
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.4e-23 114.8 111 77.5
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 1.6e-16 91.3 137 42.3
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 1.6e-16 91.3 137 42.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 4.0e-15 86.7 129 40.3
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 6.9e-15 85.9 273 26.7


User provided reference genes

Program Settings