Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 1.4e-169 599.7 353 100.0
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 1.0e-143 513.8 358 87.4
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 3.2e-137 492.3 357 86.3
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 1.5e-134 483.4 362 82.9
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 1.2e-131 473.8 358 83.5
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 4.6e-120 435.3 359 78.0
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 2.3e-119 433.0 358 79.1
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 3.3e-118 429.1 363 72.2
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 3.3e-118 429.1 377 74.8
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.1e-117 426.4 358 79.3
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 2.4e-113 412.9 376 75.3
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 5.3e-108 395.2 356 59.3
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 4.2e-97 359.0 283 61.8
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 6.7e-95 351.7 290 61.0
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 2.5e-94 349.7 282 59.9
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 6.3e-93 345.1 283 60.8
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 6.9e-92 341.7 285 58.2
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.5e-91 340.5 285 57.9
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.0e-91 340.1 283 58.7
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 3.4e-91 339.3 281 59.1
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 1.7e-90 337.0 284 58.5
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 8.5e-90 334.7 282 57.8
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 1.9e-89 333.6 283 59.7
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 4.2e-89 332.4 285 57.5
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 2.1e-88 330.1 281 57.3
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 4.6e-88 328.9 283 58.0
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 6.1e-88 328.6 281 56.9
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.3e-87 327.4 281 57.7
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 1.3e-87 327.4 278 57.2
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.3e-87 326.6 282 57.1
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 5.1e-87 325.5 282 57.1
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 2.5e-86 323.2 284 57.4
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.3e-86 322.4 281 55.2
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 7.4e-86 321.6 277 57.0
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.3e-85 320.9 284 55.3
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 1.6e-85 320.5 282 55.7
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 1.6e-85 320.5 279 55.9
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 4.8e-85 318.9 281 54.8
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 3.1e-84 316.2 281 55.2
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 4.1e-84 315.8 281 55.9
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 5.3e-84 315.5 286 57.0
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 5.3e-84 315.5 280 56.8
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 6.9e-84 315.1 278 54.7
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 1.5e-83 313.9 278 57.9
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.0e-83 313.5 285 55.4
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.6e-83 313.2 278 57.6
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 2.9e-82 309.7 281 53.4
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 5.0e-82 308.9 277 56.7
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 5.0e-82 308.9 282 57.4
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 6.5e-82 308.5 282 55.7
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.1e-81 307.8 281 55.9
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 5.5e-81 305.4 285 55.4
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 3.6e-80 302.8 285 55.4
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 7.9e-80 301.6 284 55.3
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 1.0e-79 301.2 282 55.0
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 1.0e-79 301.2 278 55.4
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.4e-79 300.8 289 54.3
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.4e-79 300.8 289 54.3
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 2.3e-79 300.1 289 52.9
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 3.0e-79 299.7 279 52.3
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 5.1e-79 298.9 250 59.6
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.5e-78 297.4 280 54.3
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 1.5e-78 297.4 281 54.4
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 2.0e-78 297.0 285 54.4
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 4.4e-78 295.8 281 54.1
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.3e-77 294.3 345 45.5
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 4.8e-77 292.4 305 49.2
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 2.4e-76 290.0 280 53.2
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 2.1e-72 276.9 268 54.1
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 3.6e-72 276.2 279 49.5
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 3.6e-72 276.2 300 47.3
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 4.7e-72 275.8 292 47.9
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 2.3e-71 273.5 283 49.8
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 3.9e-71 272.7 365 45.5
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 1.7e-69 267.3 202 62.4
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 4.8e-69 265.8 281 49.8
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 3.5e-67 259.6 290 49.3
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 7.7e-67 258.5 269 51.3
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.0e-66 258.1 292 46.9
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 5.5e-65 252.3 297 48.5
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 9.4e-65 251.5 284 47.2
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.1e-64 250.4 283 47.7
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 6.7e-63 245.4 269 50.2
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.7e-61 240.7 297 46.8
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 5.5e-57 225.7 358 40.5
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 4.8e-53 212.6 183 55.2
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 2.3e-50 203.8 269 45.0
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 2.5e-49 200.3 283 41.0
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 3.2e-49 199.9 170 56.5
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 5.5e-49 199.1 458 31.0
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 2.3e-47 193.7 183 52.5
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 8.9e-47 191.8 189 51.3
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 2.8e-45 186.8 179 53.6
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.1e-44 183.0 171 53.8
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 4.5e-43 179.5 172 50.6
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.3e-42 177.9 204 49.0
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 4.7e-40 169.5 172 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 1.2e-38 164.9 265 36.2
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 8.6e-34 148.7 165 46.7
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 6.8e-31 139.0 103 66.0
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-30 137.5 293 31.1
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 6.0e-19 99.4 168 35.1
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 6.6e-18 95.9 106 45.3
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 3.6e-16 90.1 88 48.9
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 1.8e-15 87.8 109 41.3
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 4.0e-15 86.7 158 32.3
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 5.8e-14 82.8 113 40.7
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 6.4e-13 79.3 270 26.7
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.6e-11 74.7 46 67.4
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 3.5e-11 73.6 87 42.5
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 1.3e-10 71.6 234 25.2
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 6.6e-10 69.3 59 52.5
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 2.1e-08 64.3 37 70.3
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 5.2e-07 59.7 59 45.8
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 1.2e-06 58.5 44 56.8
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 3.4e-06 57.0 59 45.8


User provided reference genes

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