Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 3.0e-265 917.9 455 100.0
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.1e-227 793.1 455 87.3
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 1.5e-224 782.7 456 86.6
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 2.4e-222 775.4 457 86.0
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 4.7e-218 761.1 454 84.8
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 4.7e-218 761.1 454 84.8
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 3.1e-217 758.4 455 84.8
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 9.8e-216 753.4 454 83.7
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.9e-214 749.2 455 84.4
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 6.6e-204 714.1 454 80.8
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 8.9e-201 703.7 454 78.0
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 9.6e-187 657.1 461 75.1
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 6.0e-165 584.7 365 82.2
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 2.5e-163 579.3 421 68.2
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.4e-161 573.5 430 67.4
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 4.5e-160 568.5 422 66.8
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.1e-158 563.9 443 63.9
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.5e-158 562.8 412 68.0
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 3.6e-157 558.9 413 67.3
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.0e-156 557.4 412 68.0
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.9e-156 555.4 415 66.3
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 1.1e-155 553.9 417 67.1
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.1e-155 553.9 423 64.3
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.9e-155 553.1 411 66.4
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 4.3e-155 552.0 413 67.3
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.3e-155 552.0 424 64.6
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 9.7e-155 550.8 432 65.0
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.3e-154 550.4 411 66.2
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.3e-154 550.4 413 67.1
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 2.8e-154 549.3 412 66.3
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.1e-153 547.4 415 64.8
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.8e-153 546.6 408 66.4
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 4.1e-153 545.4 413 66.3
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 3.4e-152 542.3 415 65.1
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 5.9e-152 541.6 413 63.9
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 5.9e-152 541.6 436 62.2
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 5.9e-152 541.6 413 66.1
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.7e-151 540.0 413 66.1
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.7e-151 540.0 432 62.7
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 1.7e-151 540.0 471 59.2
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 2.9e-151 539.3 413 66.3
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 6.5e-151 538.1 412 65.0
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.1e-150 537.3 437 62.9
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.5e-150 536.2 420 64.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 3.2e-150 535.8 410 64.9
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 5.5e-150 535.0 412 64.6
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 7.2e-150 534.6 437 62.5
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 9.4e-150 534.3 409 64.8
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.2e-149 533.9 411 64.5
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.2e-149 533.9 409 63.1
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 2.7e-149 532.7 412 63.1
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 2.7e-149 532.7 412 63.6
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 6.1e-149 531.6 415 63.6
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 1.4e-148 530.4 416 63.0
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 3.9e-148 528.9 412 61.4
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.6e-147 526.2 419 62.8
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 3.3e-147 525.8 446 61.9
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 7.4e-147 524.6 450 60.2
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.3e-146 523.9 413 64.6
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 1.3e-146 523.9 443 61.4
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 2.2e-146 523.1 415 62.9
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.7e-146 522.3 438 58.9
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 8.2e-146 521.2 436 59.6
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 8.2e-146 521.2 430 61.9
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 4.1e-145 518.8 423 61.0
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 9.1e-145 517.7 408 64.7
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.5e-144 516.9 412 61.4
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 5.9e-144 515.0 414 63.3
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 5.9e-144 515.0 414 62.6
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 7.7e-144 514.6 408 63.7
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.3e-143 513.8 408 63.7
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.7e-143 513.5 479 55.7
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.7e-143 513.5 408 63.5
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.2e-143 513.1 414 62.3
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 5.0e-143 511.9 306 82.7
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 8.5e-143 511.1 304 83.2
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 1.4e-142 510.4 473 56.4
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.4e-142 510.4 446 57.4
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 5.5e-142 508.4 412 61.9
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.1e-139 500.7 423 60.0
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 9.7e-139 497.7 409 60.9
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 9.7e-139 497.7 410 61.7
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.3e-138 497.3 429 57.3
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.4e-137 493.8 375 65.9
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 2.2e-135 486.5 446 58.3
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 4.4e-131 472.2 463 54.9
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 3.8e-127 459.1 413 56.9
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.2e-126 456.1 349 64.2
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.0e-124 451.1 234 92.7
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 5.7e-123 445.3 492 50.2
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 4.8e-122 442.2 350 62.6
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 6.3e-122 441.8 434 51.4
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.1e-121 441.0 389 58.4
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 5.9e-120 435.3 407 55.3
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.2e-117 427.6 425 51.3
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 6.1e-117 425.2 347 58.8
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 8.0e-109 398.3 345 60.6
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.0e-108 397.9 347 58.5
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 4.4e-107 392.5 379 52.2
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 2.9e-106 389.8 337 59.1
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 3.7e-106 389.4 409 48.9
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 4.6e-104 382.5 371 56.3
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 2.5e-102 376.7 300 63.3
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 5.6e-102 375.6 308 60.4
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 8.9e-100 368.2 242 75.6
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 6.0e-96 355.5 343 54.5
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 8.6e-87 325.1 190 81.6
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 2.5e-86 323.6 486 40.7
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 6.4e-82 308.9 436 42.7
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 5.6e-78 295.8 214 65.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.2e-77 294.7 259 57.5
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 5.8e-67 259.2 367 43.3
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 6.0e-56 222.6 161 66.5
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 8.7e-55 218.8 148 70.9
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 2.1e-53 214.2 156 67.9
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 6.9e-52 209.1 164 64.0
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 5.8e-51 206.1 163 60.7
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.2e-49 200.3 415 35.4
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 6.3e-45 186.0 294 39.5
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.7e-40 170.6 146 58.9
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 5.0e-34 149.8 434 28.3
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 8.5e-34 149.1 120 61.7
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.9e-33 147.9 445 28.3
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 7.2e-33 146.0 453 28.0
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.6e-32 144.8 445 28.1
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.6e-32 143.7 460 28.0
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-29 134.8 107 59.8
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.4e-28 131.0 81 75.3
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 4.7e-24 116.7 409 27.1
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 9.7e-22 109.0 73 67.1
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.8e-20 104.8 95 56.8
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 2.9e-18 97.4 64 75.0
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 2.5e-17 94.4 132 40.9
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.6e-16 91.7 66 69.7
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 4.7e-16 90.1 253 30.0
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 5.2e-15 86.7 123 41.5
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.1e-12 79.0 155 33.5
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 1.8e-07 61.6 41 73.2


User provided reference genes

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