Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1791.5 887 100.0
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1664.8 890 91.7
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1614.0 892 90.1
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1604.0 889 89.0
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1603.6 892 89.6
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1603.6 892 89.6
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1599.3 890 88.3
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1596.3 888 89.1
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1587.8 889 88.0
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1535.0 889 85.2
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1369.0 889 75.1
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1359.4 883 75.1
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1184.5 888 67.0
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1172.5 883 65.7
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1151.0 888 65.0
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1129.4 915 62.7
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1123.6 882 64.4
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1123.2 881 63.7
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1122.8 881 63.7
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1120.5 891 63.0
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1119.8 882 63.8
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1119.4 882 64.2
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1119.0 884 63.2
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1118.6 883 64.0
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 820 66.7
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1117.8 883 64.8
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1117.8 890 63.4
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1116.3 881 63.5
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1115.1 920 60.9
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1111.7 892 62.7
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1104.0 887 63.2
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1099.7 883 64.0
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1097.0 904 62.3
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1095.9 827 65.8
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1094.7 884 62.9
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1092.4 820 64.5
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1091.6 822 66.1
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1091.3 821 65.5
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1090.9 819 65.2
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1088.6 884 62.7
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1085.9 887 60.9
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1081.6 882 62.9
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1080.5 867 63.3
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1078.9 882 62.6
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1078.5 817 65.0
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1077.8 878 61.5
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1076.2 883 62.2
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 6.1e-312 1073.5 918 59.2
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 1.8e-311 1072.4 855 62.9
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 4.2e-311 1071.2 881 62.8
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.2e-310 1069.7 883 63.0
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 2.1e-310 1068.9 872 63.1
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 4.6e-310 1067.8 887 61.0
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 1.0e-309 1066.6 886 61.4
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 1.0e-309 1066.6 879 60.6
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 2.3e-309 1065.4 895 60.9
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 3.9e-309 1064.7 820 64.4
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 2.5e-308 1062.0 820 64.3
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 4.3e-308 1061.2 874 61.8
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 5.6e-308 1060.8 880 61.0
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 6.2e-307 1057.4 852 63.1
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 5.3e-306 1054.3 881 60.0
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 9.0e-306 1053.5 881 60.0
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 2.6e-305 1052.0 823 63.9
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 3.4e-305 1051.6 884 60.5
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 2.9e-304 1048.5 839 62.9
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 7.8e-302 1040.4 821 63.7
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 9.0e-298 1026.9 760 65.9
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 4.5e-297 1024.6 816 61.5
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 1.4e-295 1019.6 968 55.4
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 6.0e-294 1014.2 926 58.9
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 7.9e-294 1013.8 851 61.0
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 8.7e-293 1010.4 878 58.7
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 1.1e-292 1010.0 879 59.3
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 7.4e-292 1007.3 855 60.1
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 2.1e-291 1005.7 824 60.9
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 6.2e-291 1004.2 837 61.6
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 1.8e-290 1002.7 830 60.6
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 5.3e-290 1001.1 882 58.5
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 1.8e-285 986.1 694 68.4
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 3.9e-285 984.9 911 57.3
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 6.7e-285 984.2 867 59.1
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 5.8e-281 971.1 883 58.7
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.5e-278 961.8 738 62.7
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 5.3e-274 948.0 853 55.9
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 2.5e-271 939.1 640 69.5
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 7.2e-271 937.6 839 57.7
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 3.6e-270 935.3 770 63.6
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 2.5e-268 929.1 802 55.6
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 1.7e-267 926.4 699 66.1
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 9.1e-266 920.6 853 53.7
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 3.1e-258 895.6 788 59.3
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 4.5e-257 891.7 698 63.6
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 5.2e-253 878.2 917 52.5
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 1.6e-249 866.7 694 63.4
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 7.0e-242 841.3 849 50.1
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 2.0e-236 823.2 859 48.9
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 7.5e-228 794.7 869 47.8
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 6.6e-224 781.6 761 57.0
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 1.9e-218 763.5 746 52.0
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 3.1e-197 693.0 409 86.6
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 7.3e-191 671.8 589 53.1
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 9.6e-191 671.4 754 49.9
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 3.5e-177 626.3 509 62.9
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 4.9e-171 605.9 480 62.7
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 6.1e-153 545.8 818 39.0
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 9.7e-151 538.5 753 40.6
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 8.0e-137 492.3 617 48.6
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 6.8e-112 409.5 414 51.9
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 7.5e-111 406.0 300 68.3
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 7.5e-103 379.4 299 65.6
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 9.8e-103 379.0 206 87.4
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 4.3e-90 337.0 197 78.7
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.1e-89 334.7 188 81.4
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 4.0e-88 330.5 186 81.2
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 6.8e-88 329.7 244 66.0
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 3.7e-86 323.9 246 60.2
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 7.1e-77 293.1 417 38.4
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 7.8e-76 289.7 219 59.8
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 3.2e-45 188.0 144 59.0
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 5.5e-45 187.2 147 56.5
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.6e-23 115.9 165 37.6
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.9e-21 109.0 238 36.1
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 5.2e-11 74.3 112 42.0
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 6.3e-09 67.4 93 44.1
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.1e-08 66.6 467 22.5
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 4.1e-08 64.7 178 27.5
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.4e-08 64.3 66 54.5


User provided reference genes

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