Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2416.3 1245 100.0
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2184.8 1254 90.7
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2114.7 1258 88.2
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2111.3 1258 88.1
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 2106.3 1257 86.0
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 2098.2 1256 87.3
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2094.3 1256 87.1
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2090.8 1258 86.4
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 2083.9 1256 85.9
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 2066.2 1257 85.1
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 2051.9 1256 84.6
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 2050.0 1257 85.8
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1988.4 1185 86.9
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1868.6 1253 77.0
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1687.9 1262 70.1
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1677.1 1252 69.1
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1670.6 1278 68.5
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1669.4 1276 68.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1668.7 1252 68.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1667.9 1258 68.5
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1282 68.3
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1278 68.9
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1665.6 1255 68.8
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1662.1 1282 68.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1661.4 1276 68.3
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1661.0 1282 68.0
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1655.2 1267 68.9
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1654.8 1253 68.6
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1647.9 1277 66.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1644.8 1290 66.6
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1642.9 1249 69.7
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1638.6 1268 67.9
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1635.2 1261 66.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1633.6 1251 67.9
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1627.1 1272 67.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1625.1 1265 66.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1623.2 1266 67.1
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1621.3 1266 66.7
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1617.4 1263 66.3
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1616.3 1256 67.3
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1615.5 1266 66.7
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1614.4 1266 66.0
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1612.0 1265 67.0
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1261 66.5
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1259 66.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1599.7 1255 67.3
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1598.2 1272 65.7
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1276 64.4
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1591.2 1259 66.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1588.5 1276 64.7
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1586.2 1277 65.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1586.2 1274 66.1
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1583.5 1272 65.3
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1580.8 1259 65.8
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1579.3 1330 63.2
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1578.1 1244 65.2
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1280 66.6
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1575.1 1271 64.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1573.1 1283 64.2
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1572.0 1261 64.2
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1568.5 1258 65.0
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1565.4 1268 64.7
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1558.5 1264 65.2
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1558.5 1257 64.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1237 65.2
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1555.8 1323 63.7
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1554.7 1266 63.3
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1551.2 1292 63.5
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1551.2 1263 63.6
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1547.7 1268 63.6
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1542.3 1264 64.1
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1536.5 1268 63.5
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1533.1 1322 61.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1531.9 1233 66.3
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1531.5 1266 63.5
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1530.8 1273 63.6
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1525.4 1259 64.1
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1525.0 1179 67.1
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1524.2 1314 62.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1507.7 1333 61.4
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1492.6 1172 66.1
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1481.5 1249 62.6
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1469.9 1278 61.5
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1461.8 1187 64.1
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1448.3 1297 60.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1439.9 1182 65.2
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1437.2 1269 60.9
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1387.9 1152 62.8
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1380.5 1228 59.2
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1374.0 1250 57.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1368.6 1250 59.5
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1352.4 1010 69.6
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1350.5 1234 58.4
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1341.3 1238 58.6
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1335.1 1025 66.9
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1179.9 1020 62.1
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1120.9 1233 48.9
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1101.7 1257 48.6
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1099.7 887 63.5
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1089.3 1250 50.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1082.0 959 59.5
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 2.1e-305 1052.7 958 61.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.1e-288 995.7 678 75.8
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 5.7e-282 974.9 886 58.8
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 8.2e-273 944.5 600 81.3
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 7.2e-269 931.4 795 60.4
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 9.4e-269 931.0 557 87.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 3.6e-268 929.1 1286 43.4
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 8.8e-267 924.5 817 60.1
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.6e-255 887.1 1210 44.1
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 6.0e-207 725.7 1268 37.6
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 5.7e-181 639.4 1398 33.7
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.4e-178 630.2 486 68.7
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.5e-173 614.8 1259 33.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.5e-165 588.2 494 64.0
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 6.3e-164 582.8 603 52.4
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 2.6e-141 507.7 643 46.5
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 8.9e-126 456.1 321 71.7
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 8.6e-121 439.5 1166 30.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.2e-114 419.1 284 75.0
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 6.0e-114 416.8 702 41.0
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.1e-96 359.4 243 79.0
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 9.9e-93 346.3 339 55.8
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.7e-89 335.5 248 73.0
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 5.5e-75 287.3 267 57.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 5.5e-75 287.3 267 57.7
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 2.7e-74 285.0 200 73.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.0e-73 283.1 247 59.9
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.1e-65 254.2 157 82.2
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.9e-50 203.8 104 92.3
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 4.5e-45 188.0 135 76.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.3e-39 169.9 110 82.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.5e-35 156.4 160 59.4
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.2e-35 155.2 179 48.0
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 6.1e-34 151.0 174 49.4
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.2e-32 146.7 115 67.8
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.4e-32 144.8 160 49.4
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.8e-30 139.4 1232 22.9
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.5e-21 108.6 225 35.1
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 7.2e-19 100.9 142 42.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.6e-18 99.8 122 41.0
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 4.4e-16 91.7 95 51.6
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 2.8e-15 89.0 114 41.2
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 6.3e-15 87.8 114 40.4
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.1e-14 87.0 120 46.7
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 9.2e-14 84.0 113 41.6
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.7e-12 79.7 49 81.6
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.8e-10 72.4 93 38.7
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 8.0e-10 70.9 123 39.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.8e-09 69.7 269 26.8
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 5.2e-09 68.2 61 55.7
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.2e-08 67.0 48 70.8
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 4.4e-08 65.1 47 70.2
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 5.8e-08 64.7 79 45.6
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 2.4e-06 59.3 70 45.7


User provided reference genes

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