Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.7e-100 369.4 199 100.0
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 4.0e-89 331.6 198 90.4
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.0e-88 329.3 198 89.4
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 2.0e-88 329.3 197 88.8
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 2.0e-88 329.3 197 88.8
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 4.9e-87 324.7 196 88.8
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 8.4e-87 323.9 197 87.8
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 8.4e-87 323.9 199 87.9
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.4e-86 323.2 197 87.8
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 2.4e-86 322.4 196 88.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 4.6e-85 318.2 197 87.3
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 5.1e-84 314.7 193 86.5
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 5.3e-65 251.5 203 69.0
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.6e-48 196.8 204 55.4
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.7e-47 193.4 196 54.6
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.9e-47 192.6 200 54.5
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 6.5e-47 191.4 195 55.4
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.5e-46 190.3 201 53.2
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.5e-46 189.5 200 53.5
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 2.5e-46 189.5 199 53.8
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.2e-45 187.2 196 54.6
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.2e-45 187.2 198 53.0
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.6e-45 186.8 201 54.2
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.4e-44 183.7 197 52.8
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 3.0e-44 182.6 195 53.3
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 5.2e-44 181.8 198 52.5
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 7.5e-43 177.9 194 51.5
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 4.1e-41 172.2 198 50.0
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.0e-41 171.4 198 51.0
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.2e-40 170.6 198 51.5
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.0e-40 169.9 198 51.5
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.5e-40 169.1 198 49.5
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.7e-39 166.8 198 50.5
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.7e-39 166.8 198 49.0
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.2e-39 166.4 199 50.3
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 3.8e-39 165.6 196 51.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 6.5e-39 164.9 196 47.4
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-38 164.1 199 49.2
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.9e-38 163.3 196 46.9
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 9.4e-38 161.0 199 48.7
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.2e-37 160.6 196 50.0
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.7e-37 159.5 198 48.5
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 2.7e-37 159.5 199 46.7
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 3.6e-37 159.1 195 47.7
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 6.1e-37 158.3 194 46.4
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 1.0e-36 157.5 192 47.9
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 2.3e-36 156.4 198 46.0
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.0e-36 156.0 198 46.5
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 5.2e-36 155.2 195 44.6
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.2e-35 154.1 199 48.2
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 2.0e-35 153.3 196 44.9
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 2.0e-35 153.3 198 43.9
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.4e-35 152.5 198 46.0
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.4e-35 152.1 198 45.5
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 7.5e-35 151.4 199 46.7
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.2e-34 149.8 198 45.5
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.2e-34 149.8 198 46.5
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 2.8e-34 149.4 199 44.2
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.8e-34 148.7 195 45.1
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 8.3e-34 147.9 199 47.7
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 1.1e-33 147.5 198 44.9
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.4e-33 147.1 198 43.9
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.8e-33 146.7 199 46.7
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 2.4e-33 146.4 199 44.2
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 3.1e-33 146.0 198 43.4
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-33 146.0 199 46.7
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.2e-32 144.1 201 47.8
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 3.5e-32 142.5 201 47.8
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.5e-32 142.5 199 46.2
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 3.5e-32 142.5 199 44.7
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 5.9e-32 141.7 197 44.7
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 5.9e-32 141.7 196 43.9
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 7.7e-32 141.4 197 44.7
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.3e-31 140.6 192 43.8
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.2e-31 139.8 202 47.5
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.9e-31 139.4 197 43.7
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 8.5e-31 137.9 196 43.4
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.9e-30 136.7 199 44.2
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.9e-30 136.7 195 42.1
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 4.2e-30 135.6 197 43.1
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 5.5e-30 135.2 198 41.4
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 7.2e-30 134.8 196 42.3
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 9.5e-30 134.4 198 40.9
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 9.5e-30 134.4 197 47.7
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.2e-29 134.0 198 41.4
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.6e-29 133.7 198 43.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 2.1e-29 133.3 200 42.5
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 2.8e-29 132.9 196 41.3
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.8e-29 132.9 190 41.6
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 2.8e-29 132.9 197 42.1
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.8e-29 132.9 197 42.6
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.7e-29 132.1 198 40.9
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 6.1e-29 131.7 199 44.2
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 6.1e-29 131.7 195 42.6
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 6.8e-28 128.3 197 40.1
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.2e-27 127.5 200 40.5
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.2e-27 127.5 205 43.9
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 3.4e-27 125.9 200 41.0
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 4.4e-27 125.6 200 40.0
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.7e-27 125.2 200 40.0
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 5.7e-27 125.2 202 39.1
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 5.7e-27 125.2 200 40.5
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 7.5e-27 124.8 200 41.5
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 2.2e-26 123.2 163 47.2
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.9e-26 122.1 198 39.4
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 6.3e-26 121.7 207 38.6
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 6.3e-26 121.7 196 38.3
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.1e-25 120.9 196 41.3
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.1e-25 120.9 205 38.5
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.8e-25 120.2 197 44.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.8e-25 120.2 195 44.1
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.4e-25 119.8 196 42.3
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 4.1e-25 119.0 200 38.5
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 5.4e-25 118.6 186 41.9
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.0e-24 116.7 186 41.4
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 2.7e-24 116.3 200 37.5
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 5.9e-24 115.2 201 40.8
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.7e-23 113.6 198 37.9
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 2.9e-23 112.8 152 46.1
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 3.8e-23 112.5 197 36.5
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.8e-23 112.5 202 38.6
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 5.0e-23 112.1 200 40.5
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 6.6e-23 111.7 199 40.2
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 8.6e-23 111.3 200 37.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.5e-22 109.8 200 36.5
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 3.3e-22 109.4 196 38.3
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.3e-22 109.4 194 37.6
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 5.6e-22 108.6 185 40.0
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 7.3e-22 108.2 194 35.6
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 7.3e-22 108.2 200 38.0
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 9.5e-22 107.8 138 44.2
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 9.5e-22 107.8 128 53.1
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 3.6e-21 105.9 199 37.7
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 4.7e-21 105.5 118 53.4
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 4.7e-21 105.5 204 36.8
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 1.0e-20 104.4 195 36.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.8e-20 103.6 168 39.9
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.3e-20 103.2 200 35.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 2.3e-20 103.2 200 34.5
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 4.0e-20 102.4 204 36.8
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 6.8e-20 101.7 158 43.7
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 8.9e-20 101.3 161 42.2
BolC6t39019H Brassica oleracea HOM05D004648 ORTHO05D031748 1.2e-19 100.9 66 84.8
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 5.7e-19 98.6 195 37.9
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 2.2e-18 96.7 186 33.9
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.0e-15 87.8 158 38.6
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 2.5e-14 83.2 116 43.1
C05p30630 Brassica napus HOM05D004648 ORTHO05D031748 2.8e-13 79.7 50 88.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 4.7e-13 79.0 203 30.5
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 4.7e-13 79.0 104 43.3
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.7e-13 79.0 137 35.8
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.0e-13 78.2 136 36.8
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 5.2e-12 75.5 206 30.6
C06p39250 Brassica napus HOM05D004648 ORTHO05D005782 2.0e-11 73.6 50 84.0


User provided reference genes

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