Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 3.4e-206 721.5 377 100.0
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 2.4e-199 698.7 377 95.5
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 2.6e-198 695.3 375 95.5
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.4e-198 694.9 377 95.2
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 1.0e-197 693.3 377 95.5
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 5.0e-197 691.0 373 95.4
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 9.4e-196 686.8 378 94.4
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 6.1e-195 684.1 377 93.6
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 1.8e-194 682.6 377 93.9
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 6.7e-194 680.6 377 93.4
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 8.8e-194 680.2 378 94.2
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 4.3e-193 677.9 378 93.9
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 4.3e-193 677.9 378 93.9
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 4.8e-192 674.5 378 93.1
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 4.8e-192 674.5 378 93.1
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 1.5e-182 642.9 395 85.1
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 7.0e-175 617.5 377 83.6
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 2.0e-153 546.2 379 74.4
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 2.0e-153 546.2 379 73.4
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 2.6e-153 545.8 379 73.1
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 4.9e-152 541.6 379 73.9
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.2e-150 537.0 377 72.9
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 1.6e-150 536.6 377 72.9
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.0e-150 536.2 379 73.1
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 1.0e-149 533.9 354 76.0
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 1.7e-149 533.1 380 72.1
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 6.6e-149 531.2 407 68.3
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 8.6e-149 530.8 380 71.3
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 1.1e-148 530.4 379 71.8
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 1.1e-148 530.4 379 72.3
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 1.1e-148 530.4 379 71.8
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 4.3e-148 528.5 380 72.6
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 4.3e-148 528.5 380 71.1
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 7.3e-148 527.7 380 70.8
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 1.6e-147 526.6 379 70.4
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 2.8e-147 525.8 378 70.6
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 6.2e-147 524.6 379 71.8
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 2.3e-146 522.7 379 71.0
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 5.2e-146 521.5 380 70.8
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 6.8e-146 521.2 399 68.9
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 2.6e-145 519.2 380 69.5
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 4.4e-145 518.5 379 71.0
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 7.5e-145 517.7 379 71.0
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 1.3e-144 516.9 379 69.4
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.7e-144 516.5 379 69.4
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 4.9e-144 515.0 380 68.7
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 6.4e-144 514.6 380 70.0
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 8.3e-144 514.2 381 69.8
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 8.3e-144 514.2 382 70.7
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 8.3e-144 514.2 370 72.4
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.1e-143 513.8 388 70.1
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 5.4e-143 511.5 409 66.0
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 9.2e-143 510.8 383 70.0
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 1.2e-142 510.4 403 66.5
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 2.0e-142 509.6 379 69.7
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 3.5e-142 508.8 378 68.5
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.3e-141 506.9 377 68.2
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 1.3e-141 506.9 379 67.5
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 6.6e-141 504.6 382 68.3
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 1.9e-140 503.1 379 67.3
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 4.3e-140 501.9 379 67.8
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 1.2e-139 500.4 385 69.6
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.2e-139 500.4 379 67.3
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 3.6e-139 498.8 379 67.8
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 6.2e-139 498.0 377 68.2
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 8.1e-139 497.7 378 66.7
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 1.4e-138 496.9 380 66.6
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-138 495.7 389 66.1
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 5.2e-138 495.0 277 92.8
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 4.4e-137 491.9 434 62.2
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 1.3e-136 490.3 379 65.4
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.7e-136 490.0 379 66.8
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 2.2e-136 489.6 432 61.6
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 1.1e-135 487.3 383 65.8
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 2.4e-135 486.1 380 65.0
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 2.4e-135 486.1 378 64.6
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 2.4e-135 486.1 378 65.3
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 2.7e-134 482.6 380 65.5
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 3.5e-134 482.3 432 61.3
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 1.3e-133 480.3 377 67.1
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 2.3e-133 479.6 404 62.9
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 9.5e-132 474.2 377 65.5
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 1.2e-131 473.8 378 63.8
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 2.1e-131 473.0 384 64.3
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 2.8e-131 472.6 379 64.1
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 6.8e-130 468.0 362 68.5
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 2.0e-129 466.5 410 61.5
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 9.9e-129 464.2 386 63.0
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 4.9e-128 461.8 382 62.6
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 1.4e-127 460.3 382 62.3
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 4.6e-126 455.3 324 71.9
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.3e-125 453.8 379 62.5
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-122 442.6 379 63.1
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 9.9e-121 437.6 388 59.8
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 3.8e-120 435.6 459 52.9
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 4.9e-120 435.3 378 60.8
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 1.9e-116 423.3 331 65.3
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 2.5e-116 422.9 382 58.9
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 6.2e-115 418.3 383 58.7
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 4.6e-110 402.1 384 57.6
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.3e-109 400.6 418 55.0
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 8.7e-109 397.9 276 74.6
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 8.7e-109 397.9 382 56.0
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 1.6e-107 393.7 385 55.3
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 3.4e-97 359.4 387 53.2
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 4.8e-75 285.8 158 91.8
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.2e-73 281.2 158 91.1
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.3e-72 277.7 158 89.9
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 1.2e-70 271.2 417 41.0
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 9.7e-68 261.5 245 56.3
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 8.5e-64 248.4 460 36.1
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.0e-61 241.5 158 81.6
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 2.6e-52 210.3 341 42.2
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 8.8e-45 185.3 148 66.2
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 2.5e-39 167.2 163 50.3
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 1.4e-37 161.4 86 96.5
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 5.2e-37 159.5 129 62.0
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 9.2e-34 148.7 126 61.1
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 2.6e-28 130.6 102 58.8
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 5.8e-28 129.4 108 63.0
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 1.1e-23 115.2 103 52.4
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.6e-22 111.3 90 63.3
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 2.6e-12 77.4 124 41.1
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.2e-09 68.6 162 31.5
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 5.1e-08 63.2 39 79.5
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 1.1e-07 62.0 115 38.3
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 1.1e-07 62.0 39 76.9
Cfa024070 Carpinus fangiana HOM05D003480 ORTHO05D004425 8.1e-06 55.8 210 25.7


User provided reference genes

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