Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005323m.g Eutrema salsugineum HOM05D010116 ORTHO05D012794 7.8e-134 480.7 287 100.0
Sp2g24670 Schrenkiella parvula HOM05D010116 ORTHO05D012794 6.9e-82 308.1 306 66.7
BcaC06g33240 Brassica carinata HOM05D010116 ORTHO05D012794 2.2e-64 250.0 258 58.5
BolC7t45041H Brassica oleracea HOM05D010116 ORTHO05D012794 2.2e-64 250.0 258 58.5
C07p45180 Brassica napus HOM05D010116 ORTHO05D012794 3.8e-64 249.2 258 59.3
BraA03t13834Z Brassica rapa HOM05D010116 ORTHO05D012794 1.6e-62 243.8 258 59.7
A03p47070 Brassica napus HOM05D010116 ORTHO05D012794 2.3e-61 240.0 250 60.8
BcaC06g33152 Brassica carinata HOM05D010116 ORTHO05D012794 4.8e-59 232.3 246 61.4
AL8G38160 Arabidopsis lyrata HOM05D010116 ORTHO05D012794 6.3e-51 205.3 277 52.0
BolC2t12210H Brassica oleracea HOM05D010116 ORTHO05D012794 4.5e-49 199.1 245 53.5
BcaB07g29827 Brassica carinata HOM05D010116 ORTHO05D012794 1.3e-48 197.6 271 49.8
AT5G61470 Arabidopsis thaliana HOM05D010116 ORTHO05D012794 3.8e-48 196.1 272 48.9
BcaC03g18087 Brassica carinata HOM05D010116 ORTHO05D012794 3.3e-44 183.0 231 53.2
Carub.0008s2216 Capsella rubella HOM05D010116 ORTHO05D012794 1.2e-41 174.5 304 47.4
A02p41620 Brassica napus HOM05D010116 ORTHO05D012794 1.3e-40 171.0 245 49.8
BraA02t09104Z Brassica rapa HOM05D010116 ORTHO05D012794 5.5e-39 165.6 245 47.3
C02p61560 Brassica napus HOM05D010116 ORTHO05D012794 1.2e-38 164.5 245 46.9
CARHR275240 Cardamine hirsuta HOM05D010116 ORTHO05D012794 1.3e-35 154.5 258 44.2
BcaC06g33241 Brassica carinata HOM05D010116 ORTHO05D012794 9.1e-26 121.7 98 70.4
BcaC03g18086 Brassica carinata HOM05D010116 ORTHO05D012794 4.0e-21 106.3 127 56.7
CiPaw.03G020600 Carya illinoinensis HOM05D001867 ORTHO05D001708 2.1e-14 84.0 255 26.3
Sabra01G0096900 Salix brachista HOM05D001867 ORTHO05D001708 3.1e-13 80.1 252 28.6
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 6.8e-13 79.0 250 27.2
Potri.001G125900 Populus trichocarpa HOM05D001867 ORTHO05D001708 1.2e-12 78.2 262 27.9
CiPaw.04G013500 Carya illinoinensis HOM05D001867 ORTHO05D001708 2.2e-11 73.9 257 26.8
Duzib068G0792 Durio zibethinus HOM05D001867 ORTHO05D001708 2.9e-11 73.6 259 29.0
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 3.7e-11 73.2 257 26.8
MD01G1182000 Malus domestica HOM05D001867 ORTHO05D001708 3.7e-11 73.2 235 25.5
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 3.7e-11 73.2 244 29.1
Peaxi162Scf01525g00001 Petunia axillaris HOM05D001867 ORTHO05D001708 4.9e-11 72.8 242 26.9
PGR042G0355 Punica granatum HOM05D001867 ORTHO05D001708 6.4e-11 72.4 240 30.0
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 8.3e-11 72.0 242 27.7
Manes.14G036900 Manihot esculenta HOM05D001867 ORTHO05D001708 8.3e-11 72.0 255 23.1
Eucgr.A02901 Eucalyptus grandis HOM05D001867 ORTHO05D001708 1.4e-10 71.2 247 30.4
C06p26860 Brassica napus HOM05D001867 ORTHO05D001708 1.9e-10 70.9 237 29.1
BolC6t37860H Brassica oleracea HOM05D001867 ORTHO05D001708 1.9e-10 70.9 237 29.1
Manes.06G133500 Manihot esculenta HOM05D001867 ORTHO05D001708 1.9e-10 70.9 264 26.1
BcaC08g45077 Brassica carinata HOM05D001867 ORTHO05D001708 3.2e-10 70.1 237 28.7
THA.LOC104804640 Tarenaya hassleriana HOM05D001867 ORTHO05D001708 3.2e-10 70.1 230 31.7
BcaB02g07404 Brassica carinata HOM05D001867 ORTHO05D001708 4.1e-10 69.7 245 28.2
Prupe.2G275700 Prunus persica HOM05D001867 ORTHO05D001708 9.2e-10 68.6 239 26.4
COL.COLO4_14101 Corchorus olitorius HOM05D001867 ORTHO05D001708 1.2e-09 68.2 256 30.9
MD07G1252200 Malus domestica HOM05D001867 ORTHO05D001708 1.2e-09 68.2 242 28.1
PGSC0003DMG400026020 Solanum tuberosum HOM05D001867 ORTHO05D001708 1.2e-09 68.2 246 28.9
CARHR170970 Cardamine hirsuta HOM05D001867 ORTHO05D001708 1.6e-09 67.8 253 28.9
Oeu064580.1 Olea europaea HOM05D001867 ORTHO05D001708 2.7e-09 67.0 267 25.1
Nitab4.5_0007709g0010 Nicotiana tabacum HOM05D001867 ORTHO05D001708 3.5e-09 66.6 254 27.2
Dinv21642 Davidia involucrata HOM05D001867 ORTHO05D001708 6.0e-09 65.9 254 27.2
Lj1g0010457 Lotus japonicus HOM05D001867 ORTHO05D001708 6.0e-09 65.9 287 29.6
Thecc.03G153500 Theobroma cacao HOM05D001867 ORTHO05D001708 6.0e-09 65.9 247 28.7
HPP92_007425 Vanilla planifolia HOM05D001867 ORTHO05D001708 6.0e-09 65.9 242 26.9
AT1G02030 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 1.0e-08 65.1 234 26.1
Carub.0004s2771 Capsella rubella HOM05D001867 ORTHO05D001708 1.0e-08 65.1 294 24.8
Gorai.001G049300 Gossypium raimondii HOM05D000174 ORTHO05D001708 1.0e-08 65.1 232 26.7
A09p52800 Brassica napus HOM05D001867 ORTHO05D001708 1.3e-08 64.7 249 26.1
BolC3t15333H Brassica oleracea HOM05D001867 ORTHO05D001708 1.3e-08 64.7 237 27.4
Gohir.D07G046050 Gossypium hirsutum HOM05D010116 ORTHO05D001708 1.3e-08 64.7 236 26.7
Gohir.D07G046100 Gossypium hirsutum HOM05D000174 ORTHO05D001708 1.3e-08 64.7 234 28.2
Gorai.001G049200 Gossypium raimondii HOM05D010116 ORTHO05D001708 1.3e-08 64.7 236 26.7
PGR142G0419 Punica granatum HOM05D001867 ORTHO05D001708 1.3e-08 64.7 236 26.3
CSS0027051 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 1.7e-08 64.3 235 28.5
Sp5g02650 Schrenkiella parvula HOM05D001867 ORTHO05D001708 1.7e-08 64.3 271 26.9
C03p29860 Brassica napus HOM05D001867 ORTHO05D001708 5.0e-08 62.8 248 27.8
Gohir.A07G041933 Gossypium hirsutum HOM05D010116 ORTHO05D001708 5.0e-08 62.8 236 26.3
Eucgr.K00165 Eucalyptus grandis HOM05D001867 ORTHO05D001708 6.6e-08 62.4 234 25.6
Thhalv10009894m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 6.6e-08 62.4 241 29.0
Ciclev10007101m.g Citrus clementina HOM05D001867 ORTHO05D001708 8.6e-08 62.0 245 27.3
Cc02_g24700 Coffea canephora HOM05D001867 ORTHO05D001708 8.6e-08 62.0 251 27.1
C08p35530 Brassica napus HOM05D001867 ORTHO05D001708 1.1e-07 61.6 252 25.4
Lj3g0005427 Lotus japonicus HOM05D001867 ORTHO05D001708 1.1e-07 61.6 259 27.4
Medtr4g027440 Medicago truncatula HOM05D001867 ORTHO05D001708 1.1e-07 61.6 260 28.8
DCAR_006833 Daucus carota HOM05D000174 ORTHO05D001708 1.5e-07 61.2 234 26.5
Hma1.2p1_1172F.1_g263650 Hydrangea macrophylla HOM05D001867 ORTHO05D001708 1.5e-07 61.2 225 27.6
Medtr0160s0030 Medicago truncatula HOM05D001867 ORTHO05D001708 1.5e-07 61.2 275 25.5
Hma1.2p1_0316F.1_g123130 Hydrangea macrophylla HOM05D001867 ORTHO05D001708 1.9e-07 60.8 233 24.9
AT2G45120 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 2.5e-07 60.5 272 27.2
BcaC02g10161 Brassica carinata HOM05D001867 ORTHO05D001708 2.5e-07 60.5 247 25.1
DCAR_015875 Daucus carota HOM05D001867 ORTHO05D001708 2.5e-07 60.5 258 29.5
QL09p005291 Quercus lobata HOM05D001867 ORTHO05D001708 2.5e-07 60.5 232 29.3
SGA_v2.0_scaffold153G36965 Striga asiatica HOM05D001867 ORTHO05D001708 3.3e-07 60.1 253 24.1
Cpa.g.sc111.55 Carica papaya HOM05D001867 ORTHO05D001708 4.3e-07 59.7 231 28.1
Phvul.010G071300 Phaseolus vulgaris HOM05D001867 ORTHO05D001708 4.3e-07 59.7 241 30.3
Aa31LG1G11350 Aethionema arabicum HOM05D001867 ORTHO05D001708 5.6e-07 59.3 230 30.9
Carub.0005s2730 Capsella rubella HOM05D001867 ORTHO05D001708 5.6e-07 59.3 244 28.3
TAR629G0567 Trochodendron aralioides HOM05D001867 ORTHO05D001708 5.6e-07 59.3 259 28.2
Cfa008149 Carpinus fangiana HOM05D001867 ORTHO05D001708 7.3e-07 58.9 253 24.5
Oeu013491.1 Olea europaea HOM05D001867 ORTHO05D001708 7.3e-07 58.9 234 25.6
Glyma.03G033600 Glycine max HOM05D001867 ORTHO05D001708 9.5e-07 58.5 270 26.7
VMungo0331G0147 Vigna mungo HOM05D001867 ORTHO05D001708 9.5e-07 58.5 254 29.1
PSO063G4422 Papaver somniferum HOM05D001867 ORTHO05D001708 1.2e-06 58.2 267 24.7
BraA09t40712Z Brassica rapa HOM05D001867 ORTHO05D001708 1.6e-06 57.8 237 28.7
Glyma.01G134200 Glycine max HOM05D001867 ORTHO05D001708 1.6e-06 57.8 247 28.3
HanXRQChr16g0502251 Helianthus annuus HOM05D001658 ORTHO05D001406 1.6e-06 57.8 253 23.3
MD02G1214100 Malus domestica HOM05D001867 ORTHO05D001708 2.1e-06 57.4 269 26.8
CSS0033702 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 2.8e-06 57.0 248 25.0
Lalb_Chr12g0207861 Lupinus albus HOM05D001867 ORTHO05D001708 2.8e-06 57.0 265 29.1
TPR.G39156 Trifolium pratense HOM05D001867 ORTHO05D001708 2.8e-06 57.0 287 24.7
BcaC07g40579 Brassica carinata HOM05D001867 ORTHO05D001708 3.6e-06 56.6 237 26.2
Cpa.g.sc2070.1 Carica papaya HOM05D001867 ORTHO05D001708 3.6e-06 56.6 270 26.3
CDE11G0847 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 3.6e-06 56.6 229 24.5
Lsat_1_v5_gn_3_1101 Lactuca sativa HOM05D001867 ORTHO05D001708 3.6e-06 56.6 228 25.0
Nitab4.5_0000618g0040 Nicotiana tabacum HOM05D001867 ORTHO05D001708 3.6e-06 56.6 253 26.1
PSO782G3774 Papaver somniferum HOM05D001867 ORTHO05D001708 3.6e-06 56.6 266 24.4
Phvul.008G143900 Phaseolus vulgaris HOM05D001867 ORTHO05D001708 3.6e-06 56.6 310 26.1
MSTRG.20726 Avicennia marina HOM05D001867 ORTHO05D001708 4.7e-06 56.2 287 27.5
C04p32080 Brassica napus HOM05D001867 ORTHO05D001708 4.7e-06 56.2 253 26.9
BolC4t24761H Brassica oleracea HOM05D001867 ORTHO05D001708 4.7e-06 56.2 253 26.9
BolC8t51145H Brassica oleracea HOM05D001867 ORTHO05D001708 4.7e-06 56.2 242 25.2
Lj3g0021900 Lotus japonicus HOM05D001867 ORTHO05D001708 4.7e-06 56.2 225 24.0
Thhalv10001538m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 6.2e-06 55.8 251 26.3
Nn6g33954 Nelumbo nucifera HOM05D001867 ORTHO05D001708 6.2e-06 55.8 245 23.3
Sp4g27180 Schrenkiella parvula HOM05D001867 ORTHO05D001708 6.2e-06 55.8 247 27.9
unitig_0.g1312 Utricularia gibba HOM05D001867 ORTHO05D001708 6.2e-06 55.8 237 27.8
Duzib138G0074 Durio zibethinus HOM05D001867 ORTHO05D001708 8.0e-06 55.5 252 23.4
VMungo1383G2168 Vigna mungo HOM05D001867 ORTHO05D001708 8.0e-06 55.5 311 26.4


User provided reference genes

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