Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.1e-47 189.9 95 100.0
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.3e-40 169.5 95 86.3
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 1.8e-39 165.6 95 85.3
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.0e-37 159.8 95 85.3
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.2e-37 158.7 95 84.2
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.8e-34 149.1 90 83.3
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.2e-28 127.1 97 61.9
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.6e-27 125.9 97 64.9
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 9.7e-25 116.7 93 59.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 9.7e-25 116.7 93 59.1
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 3.7e-24 114.8 93 57.0
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 3.7e-24 114.8 93 57.0
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.8e-24 114.4 97 61.9
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 4.1e-23 111.3 95 63.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.3e-23 110.9 97 59.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-22 109.8 84 58.3
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.6e-19 99.4 77 61.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.3e-16 89.7 90 51.1
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.7e-16 89.4 94 48.9
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 8.3e-16 87.0 95 43.2
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.4e-15 86.3 91 47.3
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 2.4e-15 85.5 92 44.6
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 4.1e-15 84.7 81 49.4
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.6e-14 82.8 74 55.4
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.6e-14 82.8 93 43.0
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.0e-14 82.4 85 45.9
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.7e-14 82.0 94 48.9
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 92 46.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.9e-14 80.9 101 41.6
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 7.7e-14 80.5 86 47.7
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 7.7e-14 80.5 100 43.0
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.0e-13 80.1 92 46.7
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.0e-13 80.1 94 46.8
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.0e-13 80.1 101 44.6
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 1.3e-13 79.7 94 42.6
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 2.3e-13 79.0 89 41.6
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 2.3e-13 79.0 86 39.5
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.9e-13 78.6 88 47.7
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.9e-13 78.6 89 43.8
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.9e-13 78.6 93 39.8
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.8e-13 78.2 73 47.9
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 3.8e-13 78.2 97 41.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 3.8e-13 78.2 87 46.0
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.8e-13 78.2 88 43.2
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.8e-13 78.2 82 43.9
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 3.8e-13 78.2 93 44.1
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 5.0e-13 77.8 93 41.9
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.0e-13 77.8 90 43.3
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.0e-13 77.8 90 43.3
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 5.0e-13 77.8 90 43.3
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 5.0e-13 77.8 93 39.8
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 6.5e-13 77.4 90 42.2
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 6.5e-13 77.4 64 57.8
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 6.5e-13 77.4 68 51.5
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 8.6e-13 77.0 91 40.7
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 8.6e-13 77.0 86 45.3
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 8.6e-13 77.0 87 46.0
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.5e-12 76.3 93 40.9
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 63 49.2
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 67 50.7
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 86 45.3
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 67 50.7
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 64 48.4
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 1.5e-12 76.3 64 48.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 2.5e-12 75.5 83 44.6
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.2e-12 75.1 93 46.2
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 3.2e-12 75.1 83 44.6
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.2e-12 75.1 94 46.8
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 3.2e-12 75.1 68 50.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 3.2e-12 75.1 96 39.6
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 70 48.6
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 4.2e-12 74.7 93 44.1
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.2e-12 74.7 90 41.1
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 5.5e-12 74.3 93 40.9
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 9.5e-12 73.6 93 41.9
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 9.5e-12 73.6 81 45.7
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.2e-11 73.2 93 41.9
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.2e-11 73.2 80 45.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.2e-11 73.2 80 45.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.2e-11 73.2 84 44.0
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.2e-11 73.2 63 50.8
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.2e-11 73.2 90 44.4
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.6e-11 72.8 83 42.2
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-11 72.4 80 43.8
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.8e-11 72.0 92 46.7
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.6e-11 71.6 81 39.5
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.6e-11 71.6 81 45.7
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 3.6e-11 71.6 82 41.5
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 4.7e-11 71.2 82 43.9
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.7e-11 71.2 64 50.0
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 4.7e-11 71.2 80 45.0
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 6.1e-11 70.9 83 44.6
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 8.0e-11 70.5 63 52.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.0e-10 70.1 93 37.6
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 1.0e-10 70.1 94 41.5
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.0e-10 70.1 83 43.4
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.4e-10 69.7 90 43.3
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.4e-10 69.7 87 36.8
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.4e-10 69.7 98 40.8
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.8e-10 69.3 61 50.8
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.8e-10 69.3 90 36.7
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.3e-10 68.9 61 45.9
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.3e-10 68.9 91 36.3
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 3.0e-10 68.6 85 47.1
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.0e-10 68.6 61 45.9
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.0e-10 68.6 89 39.3
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 4.0e-10 68.2 89 36.0
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 4.0e-10 68.2 76 40.8
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 6.8e-10 67.4 87 39.1
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.2e-09 66.6 52 57.7
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 2.6e-09 65.5 75 37.3
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.4e-09 65.1 63 47.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 4.4e-09 64.7 90 35.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 5.7e-09 64.3 90 34.4
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.7e-09 64.3 66 43.9
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 7.5e-09 63.9 90 34.4
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 7.5e-09 63.9 90 34.4
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 7.5e-09 63.9 90 34.4
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 9.8e-09 63.5 66 40.9
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.3e-08 63.2 52 51.9
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 3.7e-08 61.6 60 45.0
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 3.7e-08 61.6 68 42.6
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 4.9e-08 61.2 65 44.6


User provided reference genes

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