Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 3.5e-75 285.0 159 100.0
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 4.2e-73 278.1 157 98.1
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 4.2e-73 278.1 157 98.7
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 5.5e-73 277.7 156 98.7
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 5.5e-73 277.7 159 97.5
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 1.2e-72 276.6 159 96.9
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 2.1e-72 275.8 157 96.8
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 2.1e-72 275.8 157 97.5
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 1.4e-71 273.1 157 96.2
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 1.4e-71 273.1 159 95.6
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 1.8e-71 272.7 157 96.2
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 2.3e-71 272.3 159 95.6
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 4.0e-71 271.6 157 96.2
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 6.8e-71 270.8 157 95.5
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 2.2e-69 265.8 157 94.9
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 2.7e-67 258.8 150 96.7
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 8.0e-64 247.3 153 89.5
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 1.4e-60 236.5 157 85.4
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 6.1e-56 221.1 144 83.3
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 8.0e-56 220.7 149 79.9
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 6.8e-55 217.6 149 79.9
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 2.0e-54 216.1 154 76.6
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 7.5e-54 214.2 150 76.7
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 1.1e-52 210.3 152 76.3
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.1e-52 210.3 152 76.3
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.1e-52 210.3 154 76.6
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.4e-52 209.9 149 79.9
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 1.4e-52 209.9 154 74.7
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 1.8e-52 209.5 147 77.6
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 1.8e-52 209.5 153 72.5
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 2.4e-52 209.1 149 79.9
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 2.4e-52 209.1 147 77.6
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 3.2e-52 208.8 148 78.4
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 4.1e-52 208.4 147 77.6
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 4.1e-52 208.4 155 77.4
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 5.4e-52 208.0 148 77.7
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 7.0e-52 207.6 154 76.6
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 7.0e-52 207.6 161 72.7
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 9.2e-52 207.2 151 73.5
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 9.2e-52 207.2 148 78.4
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 1.2e-51 206.8 154 74.0
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.2e-51 206.8 148 76.4
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 2.7e-51 205.7 153 72.5
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 2.7e-51 205.7 141 79.4
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.9e-51 204.5 153 76.5
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 5.9e-51 204.5 149 78.5
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 5.9e-51 204.5 150 72.7
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 7.8e-51 204.1 154 72.7
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 7.8e-51 204.1 155 75.5
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 7.8e-51 204.1 148 76.4
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 7.8e-51 204.1 149 76.5
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.0e-50 203.8 153 71.9
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.3e-50 203.4 140 78.6
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 1.7e-50 203.0 149 77.9
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.7e-50 203.0 155 74.8
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 1.7e-50 203.0 148 76.4
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 3.9e-50 201.8 154 72.1
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 5.0e-50 201.4 154 70.8
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 5.0e-50 201.4 140 79.3
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.0e-50 201.4 155 74.2
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.0e-50 201.4 155 74.2
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 5.0e-50 201.4 148 75.7
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 5.0e-50 201.4 148 75.0
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 7.3e-49 197.6 145 73.1
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.6e-48 196.4 149 73.8
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.6e-48 196.4 149 73.8
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 2.1e-48 196.1 150 76.7
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 3.6e-48 195.3 154 70.8
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 3.6e-48 195.3 149 71.8
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 3.6e-48 195.3 142 74.6
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 3.6e-48 195.3 148 73.0
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 6.2e-48 194.5 149 73.2
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 6.2e-48 194.5 146 74.0
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 6.2e-48 194.5 134 79.9
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.0e-47 193.7 147 71.4
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 4.0e-47 191.8 154 66.9
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 5.2e-47 191.4 149 69.8
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 1.5e-46 189.9 145 70.3
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 3.4e-46 188.7 144 70.8
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 6.4e-45 184.5 149 67.8
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 6.4e-45 184.5 148 69.6
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 6.4e-45 184.5 148 69.6
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 6.4e-45 184.5 142 69.0
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 8.3e-45 184.1 153 69.3
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 1.1e-44 183.7 149 70.5
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 2.4e-44 182.6 145 69.0
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 7.0e-44 181.0 145 66.9
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 1.7e-42 176.4 144 66.0
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 8.6e-42 174.1 154 64.9
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 3.3e-41 172.2 147 68.0
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.2e-40 170.2 143 62.2
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 1.1e-39 167.2 154 65.6
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 1.4e-39 166.8 148 66.9
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 6.8e-39 164.5 150 66.0
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 3.7e-37 158.7 122 74.6
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 3.2e-36 155.6 148 63.5
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 7.1e-36 154.5 113 78.8
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 1.2e-35 153.7 154 60.4
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 1.2e-35 153.7 212 47.2
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.0e-34 150.6 110 76.4
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 1.3e-34 150.2 154 57.8
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.3e-34 150.2 151 61.6
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 3.0e-34 149.1 153 53.6
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 6.6e-34 147.9 148 61.5
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 3.3e-33 145.6 138 55.1
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 7.3e-33 144.4 138 59.4
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 6.2e-32 141.4 144 59.0
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 6.2e-32 141.4 175 53.7
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 2.0e-30 136.3 151 58.3
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 4.4e-30 135.2 111 71.2
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 8.4e-29 131.0 107 66.4
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 1.1e-28 130.6 114 64.0
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 1.4e-28 130.2 110 66.4
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 9.2e-28 127.5 141 48.9
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 2.1e-27 126.3 150 56.0
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 6.0e-27 124.8 120 59.2
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 7.8e-27 124.4 151 54.3
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 7.8e-27 124.4 151 54.3
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 1.0e-26 124.0 106 65.1
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.3e-26 122.9 92 76.1
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 2.6e-22 109.4 126 57.9
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 4.4e-22 108.6 81 76.5
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 4.8e-16 88.6 65 73.8
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 4.9e-13 78.6 146 38.4
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 1.7e-10 70.1 128 42.2
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 7.3e-09 64.7 45 71.1
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 1.3e-08 63.9 54 57.4
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 8.1e-08 61.2 138 30.4
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 1.4e-07 60.5 44 68.2


User provided reference genes

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