Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 3.9e-103 378.3 204 100.0
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 1.4e-73 280.0 214 76.2
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 2.3e-63 246.1 207 71.0
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 3.3e-62 242.3 215 68.4
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 2.1e-61 239.6 213 68.5
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 3.6e-61 238.8 213 68.1
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.1e-60 237.3 213 68.1
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 2.4e-60 236.1 213 67.6
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 2.0e-59 233.0 214 67.8
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 7.1e-57 224.6 215 60.0
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 2.8e-53 212.6 150 76.0
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 6.5e-50 201.4 148 74.3
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 8.4e-50 201.1 161 70.2
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 1.1e-46 190.7 202 56.9
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.8e-44 183.3 213 53.5
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 4.2e-41 172.2 172 57.0
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 8.7e-39 164.5 209 49.8
BcaC01g02700 Brassica carinata HOM05D005900 ORTHO05D007306 2.0e-35 153.3 219 50.7
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 7.7e-35 151.4 213 47.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 5.7e-30 135.2 234 43.6
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 2.2e-29 133.3 212 47.2
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 5.3e-28 128.6 235 43.4
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.3e-26 124.0 222 41.0
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 1.7e-26 123.6 222 40.5
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 2.2e-26 123.2 227 42.3
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 3.8e-26 122.5 219 43.8
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 6.5e-26 121.7 218 43.6
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.1e-25 120.9 219 43.8
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 9.4e-25 117.9 212 40.6
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.2e-24 117.5 233 42.5
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.6e-24 117.1 148 46.6
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.6e-24 117.1 198 41.9
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 2.1e-24 116.7 215 37.2
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 2.7e-24 116.3 201 41.3
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.7e-24 116.3 219 41.1
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 4.7e-24 115.5 164 49.4
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 7.9e-24 114.8 219 42.0
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 7.9e-24 114.8 188 41.0
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.0e-23 114.4 212 40.6
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.8e-23 113.6 208 38.9
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 2.3e-23 113.2 218 41.3
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 3.9e-23 112.5 185 45.4
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 5.2e-23 112.1 191 41.4
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 6.7e-23 111.7 165 41.8
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 6.7e-23 111.7 187 38.5
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 8.8e-23 111.3 221 38.0
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.1e-22 110.9 215 40.5
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.5e-22 110.5 204 40.2
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 1.5e-22 110.5 194 42.3
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 2.0e-22 110.2 173 41.0
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 3.3e-22 109.4 212 38.7
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 4.4e-22 109.0 217 39.6
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 5.7e-22 108.6 217 37.8
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 5.7e-22 108.6 217 37.8
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 5.7e-22 108.6 207 38.6
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 7.4e-22 108.2 194 39.2
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 1.3e-21 107.5 204 37.7
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 1.7e-21 107.1 223 37.2
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.7e-21 107.1 211 37.0
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.8e-21 106.3 143 43.4
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 3.7e-21 105.9 227 38.8
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 4.8e-21 105.5 210 37.6
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 6.3e-21 105.1 202 39.1
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 6.3e-21 105.1 224 35.3
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 8.2e-21 104.8 198 42.9
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 8.2e-21 104.8 224 35.3
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.8e-20 103.6 212 35.8
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 4.1e-20 102.4 198 34.8
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.1e-20 102.4 213 35.2
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 4.1e-20 102.4 213 37.1
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 4.1e-20 102.4 187 39.0
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 5.3e-20 102.1 219 36.5
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 9.1e-20 101.3 205 38.0
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 9.1e-20 101.3 204 34.8
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.6e-19 100.5 211 37.9
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.6e-19 100.5 205 36.6
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 2.0e-19 100.1 232 35.3
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 2.0e-19 100.1 217 35.5
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 2.6e-19 99.8 201 36.3
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 3.5e-19 99.4 236 36.0
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 3.5e-19 99.4 209 34.9
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 4.5e-19 99.0 194 36.1
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 7.7e-19 98.2 227 37.4
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 7.7e-19 98.2 196 35.2
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 7.7e-19 98.2 201 36.8
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.9e-18 96.3 212 35.8
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 1.1e-17 94.4 220 37.3
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.5e-17 94.0 211 35.5
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 1.5e-17 94.0 222 39.6
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 1.5e-17 94.0 214 35.5
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 1.9e-17 93.6 152 40.8
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 2.5e-17 93.2 192 38.5
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 3.2e-17 92.8 227 37.9
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 4.2e-17 92.4 142 42.3
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 5.5e-17 92.0 187 40.1
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.2e-16 90.9 176 35.2
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 1.2e-16 90.9 212 35.4
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.2e-16 90.9 227 37.0
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.6e-16 90.5 224 37.5
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.1e-16 90.1 146 41.1
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 3.6e-16 89.4 222 35.6
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 3.6e-16 89.4 204 33.8
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 4.7e-16 89.0 242 33.9
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 1.8e-15 87.0 222 35.1
BolC3t18409H Brassica oleracea HOM05D005900 ORTHO05D007306 3.0e-15 86.3 53 71.7
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 3.7e-13 79.3 269 29.4
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 6.3e-13 78.6 208 35.1
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.1e-12 77.8 208 35.6
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 3.1e-12 76.3 203 35.5
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 7.0e-12 75.1 159 35.8
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.5e-11 72.8 91 41.8
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 5.9e-11 72.0 214 31.3
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.0e-10 71.2 171 35.7
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 1.3e-10 70.9 212 33.0
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.7e-10 70.5 206 30.6
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.2e-09 65.9 140 34.3
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.2e-08 64.3 139 35.3
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 1.6e-08 63.9 225 32.9
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 2.7e-08 63.2 204 31.4
BraA06t26085Z Brassica rapa HOM05D009868 ORTHO05D027327 3.6e-08 62.8 41 70.7
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 6.1e-08 62.0 78 39.7
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 8.0e-08 61.6 61 49.2
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 1.5e-06 57.4 221 25.8
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 3.4e-06 56.2 180 31.7
C09p09980 Brassica napus HOM05D063710 ORTHO05D042243 5.7e-06 55.5 86 48.8
BolC9t53906H Brassica oleracea HOM05D063710 ORTHO05D042243 5.7e-06 55.5 86 48.8


User provided reference genes

Program Settings