Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 8.5e-101 370.5 216 100.0
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.0e-86 322.8 217 80.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.0e-86 322.8 217 80.2
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.5e-86 322.0 216 80.6
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 3.5e-86 322.0 216 80.6
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-84 317.0 219 79.5
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.0e-81 306.2 242 72.3
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 9.8e-81 303.9 218 76.6
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 9.8e-81 303.9 242 71.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.4e-79 300.1 221 75.1
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 3.5e-78 295.4 220 75.0
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 8.6e-77 290.8 193 79.3
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-74 283.9 220 74.1
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-74 283.9 220 74.1
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.8e-74 283.1 215 74.9
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.0e-73 279.6 215 74.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 3.2e-71 272.3 219 71.7
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 4.1e-71 271.9 221 70.1
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 2.3e-69 266.2 217 72.4
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.6e-68 261.5 206 67.0
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 6.4e-56 221.5 203 66.5
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.5e-52 209.5 209 54.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.8e-51 206.1 209 55.0
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 6.2e-51 204.9 210 56.2
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 5.2e-50 201.8 211 55.0
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 5.2e-50 201.8 207 54.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 6.8e-50 201.4 202 55.4
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 6.8e-50 201.4 210 54.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.5e-49 200.3 210 57.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.5e-49 200.3 205 55.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.4e-49 199.1 211 54.5
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.4e-49 198.7 211 53.1
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.4e-49 198.7 210 53.8
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 7.6e-49 198.0 196 54.6
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.7e-48 196.8 214 53.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.9e-48 196.1 207 50.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.9e-48 196.1 191 57.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.8e-48 195.7 206 50.5
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 3.8e-48 195.7 202 54.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 4.9e-48 195.3 200 53.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.4e-47 193.7 213 51.6
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.2e-47 192.6 213 52.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.2e-47 192.6 213 52.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 4.1e-47 192.2 210 50.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 7.1e-47 191.4 212 49.1
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 9.2e-47 191.0 202 49.0
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.2e-46 190.7 211 58.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-46 190.3 212 49.1
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.1e-46 189.9 207 50.7
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.7e-46 189.5 207 50.7
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 4.6e-46 188.7 200 52.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 6.0e-46 188.3 205 50.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 7.8e-46 188.0 206 51.5
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 7.8e-46 188.0 216 51.4
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.0e-45 187.6 211 48.3
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.0e-45 187.6 183 56.8
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.7e-45 186.8 211 49.8
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.1e-45 185.3 199 47.7
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 8.6e-45 184.5 196 50.0
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.1e-44 184.1 206 50.0
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.9e-44 183.3 211 50.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 5.6e-44 181.8 213 51.2
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.3e-44 181.4 185 54.1
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 9.6e-44 181.0 210 48.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.6e-43 180.3 205 56.1
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.7e-43 178.7 203 49.8
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.7e-43 178.7 178 51.1
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 6.2e-43 178.3 209 47.4
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 6.2e-43 178.3 205 48.3
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.1e-42 177.6 209 50.7
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.1e-42 177.6 190 52.1
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.1e-42 177.6 192 49.5
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 3.1e-42 176.0 199 48.7
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 4.0e-42 175.6 195 48.7
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 5.2e-42 175.3 210 48.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.2e-42 175.3 197 49.7
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 6.9e-42 174.9 202 52.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 8.9e-42 174.5 201 50.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.4e-41 172.6 196 49.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.4e-41 172.6 196 49.5
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 4.4e-41 172.2 209 45.5
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 5.8e-41 171.8 210 55.7
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 7.6e-41 171.4 208 46.6
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 9.9e-41 171.0 205 54.6
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.3e-40 170.6 201 50.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.3e-40 170.6 210 55.2
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.7e-40 170.2 207 45.9
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 8.4e-40 167.9 204 52.5
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 8.4e-40 167.9 219 46.6
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.4e-39 167.2 204 47.1
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.4e-39 166.4 201 46.8
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.4e-39 166.4 216 45.8
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 4.2e-39 165.6 147 58.5
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 4.2e-39 165.6 196 46.9
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 9.3e-39 164.5 201 45.3
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.2e-38 164.1 210 45.2
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.1e-38 163.3 207 49.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 4.6e-38 162.2 204 48.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 7.8e-38 161.4 210 41.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.3e-37 160.6 212 44.3
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.3e-37 160.6 165 51.5
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 8.7e-37 157.9 204 45.6
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.9e-36 156.8 203 44.8
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 3.3e-36 156.0 139 57.6
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-35 153.7 204 51.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.8e-35 152.9 205 44.4
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.6e-35 152.5 198 45.5
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.8e-35 152.1 205 45.4
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 3.4e-33 146.0 205 42.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 7.6e-33 144.8 202 40.6
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 6.0e-30 135.2 205 39.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 6.7e-29 131.7 202 38.6
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 2.8e-27 126.3 190 41.6
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 7.6e-25 118.2 215 37.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 8.4e-24 114.8 120 53.3
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-22 110.5 207 35.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-22 110.5 207 35.7
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 2.7e-22 109.8 207 35.3
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.7e-22 109.8 85 65.9
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 4.6e-22 109.0 211 37.9
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 6.0e-22 108.6 119 51.3
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 6.0e-22 108.6 208 38.5
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.3e-21 107.5 207 35.3
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.6e-20 102.1 207 32.4
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 9.6e-20 101.3 208 33.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.1e-19 100.1 190 36.8
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.7e-19 99.4 160 35.6
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 4.8e-19 99.0 196 32.7
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 5.3e-18 95.5 147 34.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 3.2e-15 86.3 166 34.9
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.1e-14 83.6 156 32.1
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.8e-13 80.5 158 32.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 6.7e-13 78.6 158 34.2
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.3e-11 74.3 165 29.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.8e-11 72.4 133 30.8
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 8.5e-08 61.6 95 30.5
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 7.2e-07 58.5 107 35.5
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 9.3e-07 58.2 114 29.8
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 2.1e-06 57.0 50 50.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 3.6e-06 56.2 66 45.5
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 7.9e-06 55.1 135 31.1


User provided reference genes

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