Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 7.5e-147 523.9 270 100.0
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 8.3e-138 493.8 271 94.1
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 7.1e-137 490.7 270 93.0
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.6e-136 489.6 270 94.8
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 2.1e-136 489.2 270 90.7
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 6.0e-136 487.6 270 94.1
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 1.3e-135 486.5 270 92.6
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 1.3e-135 486.5 270 92.6
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 9.5e-134 480.3 273 91.6
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 2.4e-129 465.7 269 90.0
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 9.2e-129 463.8 269 88.8
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.2e-128 463.4 269 88.8
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 6.0e-128 461.1 271 90.4
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 2.8e-125 452.2 269 88.5
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 4.9e-114 414.8 232 93.5
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 6.4e-114 414.5 274 82.5
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 9.6e-102 374.0 271 73.1
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 4.0e-100 368.6 274 73.4
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 2.3e-87 326.2 219 79.0
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 6.7e-87 324.7 232 75.0
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.1e-86 323.9 235 74.9
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 1.9e-86 323.2 210 81.0
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 1.9e-86 323.2 235 75.7
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 9.7e-86 320.9 227 76.2
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 1.3e-85 320.5 273 67.4
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.6e-85 320.1 199 83.9
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 1.6e-85 320.1 245 70.6
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 2.8e-85 319.3 271 66.8
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 6.3e-85 318.2 215 77.2
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 6.3e-85 318.2 216 78.7
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 8.2e-85 317.8 271 68.3
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.1e-84 317.4 270 68.5
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.4e-84 317.0 259 68.0
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 1.4e-84 317.0 216 76.9
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.8e-84 316.6 229 74.2
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 2.4e-84 316.2 276 64.5
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 3.1e-84 315.8 213 78.4
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 4.1e-84 315.5 208 79.3
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 6.9e-84 314.7 234 71.4
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 6.9e-84 314.7 259 67.6
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 9.0e-84 314.3 199 82.9
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 9.0e-84 314.3 218 76.1
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.0e-84 314.3 259 67.6
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 9.0e-84 314.3 217 77.0
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 9.0e-84 314.3 243 68.7
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 9.0e-84 314.3 239 72.0
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.2e-83 313.9 217 77.0
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.2e-83 313.9 217 77.0
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 1.2e-83 313.9 215 78.1
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 1.5e-83 313.5 265 67.5
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.5e-83 313.5 274 66.8
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.5e-83 313.5 279 65.2
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 2.6e-83 312.8 218 73.9
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 5.9e-83 311.6 272 64.0
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 5.9e-83 311.6 190 83.2
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 5.9e-83 311.6 231 74.0
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 7.7e-83 311.2 204 79.4
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.7e-82 310.1 195 82.6
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 1.7e-82 310.1 233 72.5
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 2.2e-82 309.7 272 63.2
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 2.9e-82 309.3 215 74.9
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.8e-82 308.9 198 78.3
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 5.0e-82 308.5 245 69.4
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 6.5e-82 308.1 237 70.5
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 6.5e-82 308.1 220 74.5
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 6.5e-82 308.1 267 62.9
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 6.5e-82 308.1 236 71.2
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 8.5e-82 307.8 188 81.9
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.1e-81 307.4 270 64.1
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 1.4e-81 307.0 270 66.7
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.4e-81 307.0 271 63.5
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 1.9e-81 306.6 200 79.0
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 3.2e-81 305.8 193 81.9
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 3.2e-81 305.8 200 79.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 4.2e-81 305.4 267 62.9
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 5.5e-81 305.1 275 61.5
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 7.2e-81 304.7 232 69.0
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 9.4e-81 304.3 200 80.0
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 9.4e-81 304.3 217 75.1
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.2e-80 303.9 188 82.4
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 3.6e-80 302.4 270 63.3
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 6.1e-80 301.6 231 71.0
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 6.1e-80 301.6 269 62.8
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 7.9e-80 301.2 234 68.4
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 7.9e-80 301.2 202 77.7
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.0e-79 300.8 198 79.3
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 1.4e-79 300.4 204 76.5
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.8e-79 300.1 201 78.6
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 1.8e-79 300.1 264 64.4
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 2.3e-79 299.7 198 79.3
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 2.3e-79 299.7 269 62.8
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 5.1e-79 298.5 215 73.5
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.5e-78 296.2 188 79.8
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 2.5e-78 296.2 188 80.9
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.8e-77 292.7 227 70.5
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 6.3e-77 291.6 193 75.6
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 8.2e-77 291.2 203 77.3
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 9.1e-76 287.7 197 75.1
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 4.5e-75 285.4 192 77.1
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 2.2e-69 266.5 236 62.7
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 8.2e-69 264.6 221 62.4
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 1.1e-68 264.2 269 59.9
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.5e-67 260.4 238 64.3
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.3e-63 246.5 192 64.6
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 2.8e-61 239.6 199 60.8
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 7.0e-60 235.0 201 57.7
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 2.7e-56 223.0 198 64.6
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 4.8e-53 212.2 142 78.9
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.8e-52 210.3 127 84.3
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 3.8e-50 202.6 271 48.0
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 2.2e-45 186.8 193 51.3
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 2.0e-43 180.3 184 50.0
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 2.7e-43 179.9 108 82.4
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 5.9e-43 178.7 182 56.0
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 7.7e-43 178.3 135 69.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.2e-35 154.5 108 65.7
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 2.5e-33 146.7 256 37.5
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.8e-30 134.8 121 66.1
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 2.3e-23 113.6 73 83.6
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 3.1e-23 113.2 84 66.7
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 3.5e-19 99.8 108 59.3
BcaB01g05146 Brassica carinata HOM05D039718 ORTHO05D031954 1.6e-16 90.9 107 51.4
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 8.9e-15 85.1 48 81.2
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 3.4e-14 83.2 46 93.5
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.4e-12 77.8 80 60.0


User provided reference genes

Program Settings