Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.1e-181 637.1 315 100.0
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 3.1e-176 621.7 315 97.5
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 4.0e-176 621.3 315 97.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 9.0e-176 620.2 315 97.1
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 4.5e-175 617.8 315 96.8
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.7e-174 615.9 315 96.8
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-173 613.2 314 95.2
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.6e-172 607.8 314 93.3
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.1e-168 595.1 315 92.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.1e-168 595.1 315 92.7
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.2e-166 589.0 315 91.4
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.4e-165 586.3 312 92.3
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.9e-165 585.9 315 92.4
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.2e-164 583.2 315 92.1
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 6.0e-164 580.9 316 90.2
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 4.3e-162 574.7 314 89.2
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 7.4e-162 573.9 316 88.6
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 9.6e-162 573.5 314 88.9
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.3e-161 573.2 316 88.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.6e-161 572.8 315 87.0
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.1e-161 572.4 316 88.6
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 3.7e-161 571.6 316 87.7
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 4.8e-161 571.2 316 89.2
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 8.2e-161 570.5 313 87.5
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-160 570.1 316 89.2
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.4e-160 569.7 315 88.3
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 2.4e-160 568.9 315 87.3
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 2.4e-160 568.9 316 89.2
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.4e-160 568.9 314 88.2
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.1e-160 568.2 317 88.3
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 5.3e-160 567.8 316 88.9
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 6.9e-160 567.4 314 88.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 6.9e-160 567.4 316 88.6
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.2e-159 566.6 316 88.0
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 1.2e-159 566.6 316 87.0
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 87.0
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.2e-159 566.6 317 87.4
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 87.3
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 3.4e-159 565.1 316 88.6
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 5.9e-159 564.3 316 88.0
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 5.9e-159 564.3 316 87.3
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.9e-159 564.3 316 88.6
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 5.9e-159 564.3 316 86.7
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 7.6e-159 563.9 316 88.3
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.6e-159 563.9 315 87.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 7.6e-159 563.9 315 87.3
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.3e-158 563.1 315 88.6
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.3e-158 563.1 318 87.4
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.2e-158 562.4 313 86.6
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.2e-158 562.4 316 88.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.9e-158 562.0 316 87.0
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.0e-158 561.2 315 86.7
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 5.0e-158 561.2 314 87.6
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.5e-158 560.8 316 87.7
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 8.5e-158 560.5 316 87.0
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 7.2e-157 557.4 316 85.4
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 9.3e-157 557.0 316 86.7
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.2e-156 556.6 314 85.4
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.2e-156 556.6 316 86.4
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.6e-156 556.2 331 84.3
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.6e-156 556.2 316 85.8
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.1e-156 555.8 316 86.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.6e-156 555.1 314 86.3
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 84.8
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.3e-155 553.1 317 85.5
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.3e-155 552.4 315 84.4
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.3e-155 552.4 315 84.4
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 2.3e-155 552.4 315 85.7
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 2.3e-155 552.4 316 85.8
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 3.9e-155 551.6 339 81.4
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 5.1e-155 551.2 316 85.4
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.1e-154 550.1 314 86.3
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.9e-154 549.3 315 84.1
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 1.9e-154 549.3 316 84.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.9e-154 549.3 315 85.4
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 4.3e-154 548.1 316 85.1
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.3e-153 546.6 315 84.8
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 2.2e-153 545.8 316 84.2
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.2e-153 545.8 316 86.7
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.8e-153 545.4 315 84.4
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 2.8e-153 545.4 316 85.4
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 2.8e-153 545.4 316 85.4
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 3.7e-153 545.0 315 84.1
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 6.3e-153 544.3 317 86.8
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 8.2e-153 543.9 316 83.5
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.4e-152 543.1 322 83.5
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 5.3e-152 541.2 314 85.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 5.3e-152 541.2 315 83.8
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.2e-151 540.0 315 86.3
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.2e-151 540.0 315 84.1
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.0e-151 539.3 318 84.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.0e-151 539.3 318 84.6
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.4e-151 538.5 318 84.6
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.4e-151 538.5 318 84.6
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.5e-151 538.1 318 84.3
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 4.5e-151 538.1 316 82.9
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 4.5e-151 538.1 314 84.1
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.9e-151 537.7 318 84.3
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.9e-151 537.7 318 84.3
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 7.7e-151 537.3 316 84.5
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.2e-150 535.8 315 83.2
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.9e-150 535.4 313 85.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.5e-149 532.3 320 80.3
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.2e-149 531.9 310 84.8
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 3.2e-149 531.9 314 84.7
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 5.5e-149 531.2 384 72.1
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 9.4e-149 530.4 314 84.4
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 4.6e-148 528.1 315 83.5
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 6.1e-148 527.7 310 84.2
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.1e-148 527.7 338 78.7
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.3e-147 525.8 313 85.3
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 5.1e-147 524.6 314 83.1
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.3e-146 521.9 307 83.1
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 2.8e-145 518.8 321 80.7
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-143 513.5 310 83.2
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.7e-142 509.6 311 80.4
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 5.5e-141 504.6 316 76.6
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.6e-140 503.1 286 85.3
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 3.3e-138 495.4 295 80.7
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 9.7e-138 493.8 289 83.0
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 2.8e-137 492.3 316 78.2
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 2.0e-135 486.1 261 92.3
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.5e-135 485.3 326 75.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 3.5e-135 485.3 284 83.8
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.3e-134 483.4 313 77.0
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.0e-134 481.5 283 83.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 8.5e-134 480.7 462 57.4
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 7.2e-133 477.6 310 74.2
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 8.2e-129 464.2 315 72.4
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 7.2e-125 451.1 314 70.4
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.6e-119 433.3 314 69.1
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.0e-119 433.0 285 75.1
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.1e-116 422.9 241 85.9
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.9e-96 356.7 214 81.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 8.9e-83 311.2 252 62.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.6e-79 300.4 192 76.6
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.1e-76 290.0 178 78.7
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.5e-74 283.9 174 79.3
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 2.6e-74 283.1 315 50.8
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 8.4e-73 278.1 311 49.5
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 6.0e-71 271.9 163 82.8
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 3.9e-70 269.2 275 53.5
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.0e-66 256.9 189 65.6
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.2e-65 253.4 152 78.9
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.2e-65 253.4 152 78.9
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 5.6e-61 238.8 185 69.7
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 7.4e-61 238.4 300 44.7
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 2.4e-59 233.4 279 49.5
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 1.5e-58 230.7 112 96.4
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.9e-56 223.8 181 61.9
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 5.5e-56 222.2 308 40.9
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 3.7e-52 209.5 170 68.8
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-49 200.7 136 73.5
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 9.3e-48 194.9 302 43.4
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.2e-47 194.5 128 70.3
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 6.7e-46 188.7 113 76.1
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 6.7e-46 188.7 113 76.1
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 5.7e-45 185.7 113 75.2
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.8e-44 183.3 103 83.5
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.6e-42 176.8 150 64.7
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.5e-41 172.2 143 64.3
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-37 161.0 180 53.3
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-36 157.9 113 74.3
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 6.3e-36 155.6 277 34.3
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.5e-34 151.0 108 69.4
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.7e-31 140.2 117 65.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.4e-27 127.9 80 78.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.4e-27 127.9 80 78.8
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.0e-26 124.0 68 82.4
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 8.5e-25 118.6 60 90.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 8.8e-22 108.6 72 68.1
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 1.4e-19 101.3 53 88.7
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 5.3e-19 99.4 117 44.4
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 2.6e-18 97.1 53 84.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.9e-16 90.9 47 87.2
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.6e-15 87.8 94 59.6
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 2.1e-15 87.4 52 80.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-13 81.6 43 88.4
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 3.7e-12 76.6 102 48.0
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.1e-07 60.8 37 62.2
BcaC09g49081 Brassica carinata HOM05D003935 ORTHO05D091498 1.0e-06 58.5 54 63.0
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 1.4e-06 58.2 69 49.3
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 1.8e-06 57.8 37 59.5
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 2.3e-06 57.4 33 78.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 2.3e-06 57.4 33 78.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 2.3e-06 57.4 33 78.8


User provided reference genes

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