Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.9e-207 724.9 354 100.0
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.8e-177 625.9 354 84.5
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.1e-177 625.2 349 84.8
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 9.1e-177 623.6 353 83.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-176 622.9 348 84.8
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.7e-176 622.1 353 83.6
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-176 621.7 354 84.7
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 5.9e-176 620.9 353 82.7
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 3.2e-174 615.1 353 82.2
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.1e-173 612.5 348 83.0
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 3.0e-172 608.6 353 81.0
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.6e-168 596.3 349 81.9
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.7e-165 584.7 362 77.9
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.4e-161 573.2 397 71.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.2e-160 570.1 352 76.1
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.4e-155 551.6 365 74.8
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 3.9e-151 538.5 348 71.8
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.3e-150 535.4 354 72.9
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.0e-148 528.5 348 71.0
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.6e-147 525.8 354 69.5
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-146 523.5 348 70.4
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-145 520.4 352 70.5
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.9e-145 519.6 349 69.3
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 5.4e-145 518.1 355 70.1
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 7.1e-145 517.7 353 69.1
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.2e-145 517.3 349 69.9
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.6e-144 516.5 349 69.6
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.7e-144 515.8 349 69.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-144 515.4 349 73.9
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 3.5e-144 515.4 349 71.6
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 6.0e-144 514.6 544 52.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.3e-143 513.5 349 69.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-143 513.5 349 69.3
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.3e-143 512.7 350 70.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.3e-143 512.7 350 70.0
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 3.0e-143 512.3 349 70.5
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 8.6e-143 510.8 355 69.0
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.1e-142 510.4 347 70.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.5e-142 510.0 350 68.9
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.5e-142 509.2 349 69.9
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.3e-142 508.8 351 68.4
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.3e-142 508.8 348 70.4
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.3e-142 508.4 348 69.3
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 4.3e-142 508.4 348 71.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 9.5e-142 507.3 349 68.8
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-141 506.9 348 68.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.1e-141 506.1 349 69.9
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.8e-141 505.8 349 68.2
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.7e-141 505.0 349 67.9
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 6.2e-141 504.6 350 68.6
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.4e-140 502.7 348 69.3
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.4e-140 502.7 349 67.6
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.1e-140 502.3 349 67.9
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 5.2e-140 501.5 356 66.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 6.8e-140 501.1 355 66.5
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.5e-139 500.0 348 69.3
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.6e-139 499.2 348 68.1
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.4e-139 498.4 349 66.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 7.6e-139 497.7 357 68.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.3e-138 496.9 356 65.7
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.8e-138 495.4 349 67.6
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.9e-138 495.0 351 65.2
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 8.4e-138 494.2 359 66.3
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.1e-137 493.8 359 67.4
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.2e-137 492.3 380 63.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 3.2e-137 492.3 350 65.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 4.1e-137 491.9 358 66.8
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.2e-136 490.3 350 65.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.1e-136 489.6 348 67.0
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.6e-136 488.4 344 66.3
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 6.0e-136 488.0 348 66.4
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 7.8e-136 487.6 349 65.0
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.3e-135 486.9 346 66.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.3e-135 486.9 367 64.3
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.7e-135 486.5 349 65.3
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.0e-135 485.7 348 65.8
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.0e-135 485.7 348 65.2
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.9e-135 485.3 349 67.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.9e-135 485.3 347 65.4
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 6.6e-135 484.6 349 65.0
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.7e-135 484.2 348 64.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.1e-134 483.8 347 65.7
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.5e-134 483.4 365 64.4
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.2e-133 480.3 350 66.6
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.6e-133 479.9 348 65.2
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.8e-133 479.2 348 65.5
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.7e-133 478.4 357 66.4
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-132 477.2 350 66.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.1e-132 477.2 378 60.6
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.4e-132 476.1 374 61.2
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 6.9e-132 474.6 249 88.0
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.0e-132 474.2 344 66.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.4e-131 471.9 357 65.0
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 9.9e-131 470.7 346 63.9
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.4e-130 468.0 302 70.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.4e-129 466.1 335 66.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.4e-129 466.1 321 69.8
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.2e-129 465.7 407 57.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 4.2e-129 465.3 357 61.9
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 4.2e-129 465.3 334 65.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 5.4e-129 464.9 341 64.2
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 9.3e-129 464.2 303 71.3
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 9.3e-129 464.2 355 63.9
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.0e-127 460.7 309 69.6
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.3e-127 460.3 348 65.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.5e-126 456.8 304 69.4
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.6e-125 452.2 321 65.4
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 6.2e-125 451.4 277 74.0
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 4.0e-124 448.7 321 64.5
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.6e-123 446.0 321 67.3
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-122 443.4 302 65.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-121 439.9 302 67.2
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.0e-119 434.1 285 75.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.6e-118 428.3 263 74.1
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.5e-115 418.7 313 64.5
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.5e-112 409.1 334 62.0
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-111 407.1 320 60.9
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.3e-109 400.6 329 60.2
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.6e-104 382.1 378 52.1
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 9.0e-100 367.9 245 68.2
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.3e-98 364.0 255 69.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.3e-98 364.0 252 69.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.8e-98 362.5 377 51.5
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 8.5e-98 361.3 232 72.8
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-96 355.9 326 55.8
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.0e-95 354.4 361 49.9
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 9.7e-94 347.8 246 67.9
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.8e-93 346.3 380 49.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 8.2e-93 344.7 403 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.1e-92 344.4 363 48.8
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.1e-92 342.8 247 67.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.1e-89 334.3 307 51.1
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.6e-88 329.3 354 49.2
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.6e-88 329.3 294 56.5
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 9.7e-86 321.2 218 66.1
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 4.8e-85 318.9 218 72.0
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 3.1e-84 316.2 236 62.7
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-82 310.8 196 76.5
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 3.6e-80 302.8 192 69.8
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.2e-77 293.5 302 50.7
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-76 291.2 228 63.2
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.4e-76 290.8 273 53.5
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.3e-76 288.9 194 71.1
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 3.8e-74 282.7 277 49.1
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-69 266.9 194 67.0
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.2e-69 266.9 194 65.5
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 6.1e-64 248.8 339 43.1
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.2e-61 240.4 134 80.6
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 7.8e-51 205.3 155 67.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 7.5e-46 188.7 418 29.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.4e-44 183.7 125 64.0
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 2.4e-44 183.7 158 58.9
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 7.0e-44 182.2 207 48.3
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.5e-41 173.7 329 38.3
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 7.3e-41 172.2 226 38.9
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 6.2e-40 169.1 89 85.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 8.0e-40 168.7 302 30.8
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.1e-36 158.3 116 67.2
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.5e-33 147.1 343 32.4
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.4e-28 130.6 207 36.7
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.2e-14 85.1 60 61.7
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-14 84.3 77 50.6
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.2e-11 75.1 75 48.0
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.6e-11 74.7 49 67.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.6e-11 74.7 69 49.3
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 3.5e-11 73.6 69 49.3
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.3e-08 65.1 73 49.3
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.4e-07 61.6 76 48.7
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.8e-07 61.2 43 62.8
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 6.9e-07 59.3 43 60.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.6e-06 57.4 40 60.0


User provided reference genes

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