Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.2e-200 703.0 359 100.0
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.1e-193 679.9 360 96.7
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.9e-193 679.1 359 96.4
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.9e-193 679.1 359 96.4
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.9e-193 679.1 359 96.4
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 4.1e-193 677.9 359 96.4
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.2e-192 676.4 359 96.1
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 6.0e-192 674.1 359 96.1
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.3e-191 672.2 359 95.8
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 6.8e-188 660.6 359 94.4
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.4e-187 658.3 359 94.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 6.4e-186 654.1 359 92.8
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 1.7e-183 646.0 349 94.6
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-183 646.0 349 94.6
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 1.7e-183 646.0 349 94.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 2.0e-179 632.5 359 89.4
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.1e-168 595.9 348 85.9
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.7e-160 568.9 351 84.3
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.8e-157 558.1 359 80.5
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.8e-157 558.1 359 80.5
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 9.3e-153 543.9 362 76.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.5e-152 542.0 363 77.4
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.9e-150 536.2 360 75.8
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 8.2e-149 530.8 357 76.5
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-148 528.5 357 75.9
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-148 528.1 357 75.9
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 5.3e-148 528.1 357 74.5
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 6.9e-148 527.7 350 77.4
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 6.9e-148 527.7 367 75.5
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 3.4e-147 525.4 357 75.6
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 4.5e-147 525.0 347 77.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 5.9e-147 524.6 355 74.9
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 7.7e-147 524.2 359 74.7
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.7e-146 523.1 366 74.3
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.9e-146 522.3 318 81.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.1e-145 520.4 366 72.7
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.4e-145 520.0 371 73.9
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.4e-145 520.0 352 75.3
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.4e-145 520.0 354 72.6
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.9e-145 519.6 355 74.6
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-145 519.2 325 80.3
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.2e-145 517.7 376 72.6
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 7.2e-145 517.7 350 75.1
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.2e-144 516.9 344 77.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 2.1e-144 516.2 348 75.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.1e-144 516.2 360 73.3
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.1e-144 516.2 351 74.6
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 3.6e-144 515.4 371 72.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.0e-143 513.8 359 73.8
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-143 513.5 351 74.1
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-143 513.5 305 83.3
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.3e-143 512.7 320 80.6
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.3e-143 512.7 349 72.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.3e-143 512.7 349 72.5
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 8.8e-143 510.8 372 69.6
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 8.8e-143 510.8 348 75.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.0e-142 509.6 328 78.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.5e-142 509.2 335 77.9
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.3e-142 508.8 338 76.6
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 7.4e-142 507.7 358 72.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.3e-141 506.9 340 75.9
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.7e-141 506.5 323 78.3
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 8.2e-141 504.2 310 79.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.1e-140 503.8 348 73.0
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 3.1e-140 502.3 348 72.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.1e-140 502.3 385 69.1
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 4.1e-140 501.9 356 71.9
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-140 501.5 360 72.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 6.9e-140 501.1 356 72.5
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 9.1e-140 500.7 311 78.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.5e-139 500.0 325 77.2
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 7.7e-139 497.7 355 72.4
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 5.0e-138 495.0 334 74.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 8.5e-138 494.2 281 86.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.5e-138 494.2 341 72.7
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.9e-137 493.0 358 70.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 3.2e-137 492.3 355 72.1
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.5e-137 491.5 330 72.7
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 5.5e-137 491.5 352 71.9
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.4e-137 490.7 329 74.2
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.4e-137 490.7 329 74.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.1e-136 489.6 321 77.9
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.1e-136 489.6 299 80.3
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 2.7e-136 489.2 358 68.4
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 3.6e-136 488.8 358 68.7
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.9e-136 487.6 300 77.3
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-134 483.8 349 71.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 9.7e-134 480.7 309 76.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 2.8e-133 479.2 349 69.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.7e-133 478.8 366 67.8
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.4e-132 476.1 300 77.3
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 7.0e-132 474.6 331 71.6
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 9.1e-132 474.2 309 74.4
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.7e-131 471.1 353 68.6
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.2e-130 469.5 309 74.8
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 3.8e-130 468.8 366 68.3
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 8.5e-130 467.6 345 70.1
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 4.2e-129 465.3 339 68.7
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.6e-128 463.4 348 69.8
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 2.1e-128 463.0 333 71.8
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.4e-127 460.3 336 70.8
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.1e-126 457.2 387 64.1
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-126 456.4 305 75.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.1e-124 450.7 295 76.3
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.1e-124 450.7 297 72.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-124 449.5 338 70.7
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 3.1e-124 449.1 323 71.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.1e-124 449.1 322 68.3
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.9e-123 444.9 342 65.8
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.7e-122 443.4 380 63.9
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.7e-122 443.4 317 68.8
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.2e-122 443.0 338 66.3
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.2e-121 439.1 272 80.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.6e-120 436.8 300 69.7
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 3.0e-119 432.6 313 68.4
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.2e-118 430.6 379 62.3
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 3.3e-118 429.1 353 67.1
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 7.5e-118 427.9 301 73.4
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.7e-117 426.8 378 61.6
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 6.3e-117 424.9 359 64.3
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.2e-115 420.6 297 72.4
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.2e-112 410.6 317 67.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.9e-106 389.4 360 59.4
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 9.5e-105 384.4 233 82.4
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 2.8e-104 382.9 244 77.9
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 4.7e-104 382.1 294 66.7
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.8e-103 378.3 229 81.2
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.7e-101 372.5 313 62.0
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 4.1e-100 369.0 333 60.4
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.2e-100 367.9 300 62.7
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.6e-88 330.5 228 73.7
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.8e-86 321.2 227 69.6
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.1e-83 313.5 243 69.1
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.5e-83 312.8 214 69.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 8.6e-82 308.1 351 51.0
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.6e-74 282.0 197 73.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.8e-72 276.6 262 60.3
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 7.8e-67 258.5 178 75.3
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.2e-59 234.6 167 74.3
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.7e-59 233.4 176 64.8
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.1e-39 166.8 129 65.1
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-38 164.1 120 66.7
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.0e-37 161.8 129 61.2
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.2e-35 154.8 125 61.6
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-31 139.8 117 67.5
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 9.0e-31 138.7 133 60.2
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.0e-29 135.2 291 31.3
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 6.5e-29 132.5 79 94.9
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-28 131.3 97 63.9
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.7e-27 127.1 70 80.0
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.7e-27 127.1 124 59.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-24 117.9 142 49.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.3e-23 112.8 88 67.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 6.5e-21 105.9 92 59.8
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.2e-20 102.4 86 57.0
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.3e-16 91.7 86 47.7
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.8e-16 89.7 53 69.8
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-14 85.1 73 65.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 6.5e-13 79.3 52 65.4


User provided reference genes

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