Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 2.6e-268 928.3 482 100.0
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 2.6e-212 742.3 487 83.0
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.5e-162 577.0 493 64.9
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.9e-162 576.6 559 61.9
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 5.1e-147 525.4 551 59.3
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 4.0e-144 515.8 559 58.5
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 5.6e-138 495.4 486 63.4
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.1e-136 491.1 486 63.2
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.1e-136 491.1 486 63.2
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 5.3e-136 488.8 500 63.0
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 1.2e-135 487.6 503 62.6
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 4.2e-133 479.2 555 58.2
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 2.3e-131 473.4 489 63.0
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 1.9e-130 470.3 485 62.9
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 1.9e-130 470.3 485 62.9
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 4.1e-128 462.6 490 56.5
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 2.3e-115 420.2 490 53.7
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 6.5e-110 402.1 485 51.8
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.8e-107 394.0 496 53.0
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 7.2e-85 318.9 292 64.4
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 1.7e-78 297.7 487 46.4
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 1.7e-78 297.7 487 46.4
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 4.3e-77 293.1 488 46.1
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 1.7e-70 271.2 374 51.1
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 1.7e-70 271.2 487 43.5
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.5e-50 204.9 315 45.1
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 9.2e-48 195.7 506 35.0
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 2.7e-47 194.1 506 35.6
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.5e-42 178.3 451 35.3
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 1.7e-41 174.9 504 33.5
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 2.2e-41 174.5 439 35.3
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 4.9e-41 173.3 288 42.0
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 9.3e-40 169.1 441 35.1
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 1.6e-39 168.3 301 40.2
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.6e-39 168.3 403 37.5
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 2.7e-39 167.5 444 34.7
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 3.5e-39 167.2 496 34.3
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 6.0e-39 166.4 491 32.8
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.7e-38 164.9 487 33.5
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 1.7e-38 164.9 446 33.2
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 5.1e-38 163.3 494 30.8
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 5.1e-38 163.3 414 35.5
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 4.3e-37 160.2 328 37.8
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 6.2e-36 156.4 304 36.8
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 2.4e-35 154.5 272 40.4
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.2e-34 152.1 323 35.6
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 2.0e-34 151.4 149 63.8
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 2.0e-34 151.4 490 32.2
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.6e-34 151.0 340 35.0
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.6e-34 151.0 358 34.4
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.6e-34 151.0 367 35.7
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 9.9e-34 149.1 340 35.0
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 4.9e-33 146.7 351 34.8
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 6.4e-33 146.4 500 29.8
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 6.4e-33 146.4 300 37.0
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 8.4e-33 146.0 426 32.9
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 8.4e-33 146.0 435 31.3
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 8.4e-33 146.0 325 35.4
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 9.3e-32 142.5 319 37.0
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 1.2e-31 142.1 318 34.9
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.2e-31 142.1 338 37.3
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.6e-31 141.7 339 33.0
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 7.9e-31 139.4 447 32.2
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 2.3e-30 137.9 390 34.6
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 8.7e-30 136.0 262 36.6
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 8.7e-30 136.0 439 31.9
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 1.1e-29 135.6 297 36.4
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 1.1e-29 135.6 494 29.8
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.9e-29 134.8 292 38.7
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 2.5e-29 134.4 367 32.4
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 9.6e-29 132.5 345 31.9
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.1e-28 131.3 228 38.6
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.8e-28 131.0 290 37.6
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.8e-28 131.0 295 33.6
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 3.6e-28 130.6 433 32.1
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 3.6e-28 130.6 341 35.2
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 4.8e-28 130.2 255 38.0
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 1.1e-27 129.0 294 35.0
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 5.3e-27 126.7 305 34.1
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 6.9e-27 126.3 165 43.0
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 1.2e-26 125.6 434 30.4
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.2e-26 125.6 290 37.2
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 1.5e-26 125.2 445 29.2
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.5e-26 125.2 345 35.4
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 1.5e-26 125.2 493 28.4
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 2.6e-26 124.4 275 34.9
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 2.6e-26 124.4 437 30.2
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 4.5e-26 123.6 403 32.3
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 7.6e-26 122.9 248 37.5
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 9.9e-26 122.5 197 42.6
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 1.3e-25 122.1 355 32.4
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.3e-25 122.1 284 35.2
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.3e-25 122.1 193 42.5
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 1.7e-25 121.7 452 31.0
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 2.2e-25 121.3 381 31.8
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.1e-24 119.0 436 32.1
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.9e-24 118.2 256 33.2
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 2.4e-24 117.9 438 31.1
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.6e-23 115.2 280 34.3
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 6.0e-23 113.2 518 26.4
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 1.0e-22 112.5 288 33.3
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 2.3e-22 111.3 277 33.6
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 5.1e-22 110.2 245 34.3
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.3e-21 107.5 299 31.1
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 1.3e-20 105.5 431 29.7
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 1.4e-19 102.1 429 28.4
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 2.0e-18 98.2 182 37.9
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 2.6e-18 97.8 127 53.5
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 3.4e-18 97.4 214 34.6
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 1.7e-17 95.1 268 31.3
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 8.4e-17 92.8 304 28.6
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 1.2e-15 89.0 107 46.7
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 3.5e-15 87.4 273 31.9
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 7.9e-15 86.3 187 36.9
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.3e-14 84.7 82 57.3
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 3.9e-14 84.0 130 44.6
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 6.7e-14 83.2 269 28.6
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 3.1e-11 74.3 187 35.3
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 3.4e-10 70.9 64 62.5
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 1.6e-07 62.0 186 26.9
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 2.7e-07 61.2 283 23.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 1.0e-06 59.3 123 34.1
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.3e-06 58.9 216 31.5
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 1.3e-06 58.9 99 43.4
C04p01780 Brassica napus HOM05D006269 ORTHO05D001487 1.8e-06 58.5 184 26.1
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.3e-06 58.2 159 31.4
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.3e-06 58.2 106 34.0
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 3.0e-06 57.8 145 33.1
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 3.9e-06 57.4 264 25.0
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 6.7e-06 56.6 123 34.1
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 6.7e-06 56.6 146 30.8
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 6.7e-06 56.6 109 32.1
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 8.7e-06 56.2 120 34.2
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 8.7e-06 56.2 126 30.2


User provided reference genes

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