Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 0.0e+00 1103.6 540 100.0
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.2e-281 972.6 549 87.8
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.2e-281 972.6 545 88.3
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.1e-281 971.8 545 88.3
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.0e-280 969.5 540 88.5
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 7.4e-279 963.4 540 88.1
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.8e-277 958.7 544 87.7
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 8.5e-275 949.9 541 86.9
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 8.5e-275 949.9 540 87.6
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 2.7e-273 944.9 545 85.9
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.7e-267 925.6 535 85.8
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 5.7e-255 884.0 536 82.3
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 4.0e-232 808.1 534 75.8
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.3e-210 735.3 541 67.5
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 2.0e-207 726.1 534 67.6
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 2.9e-206 722.2 536 66.8
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 3.8e-206 721.8 532 66.7
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.8e-206 721.8 541 66.9
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.4e-205 719.9 541 66.5
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.4e-205 719.2 522 68.4
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 5.4e-205 718.0 533 66.6
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.6e-204 716.5 531 68.5
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.7e-204 715.7 519 68.2
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 3.9e-203 711.8 532 66.7
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 6.6e-203 711.1 539 67.0
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.3e-201 706.8 526 66.7
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 4.8e-201 704.9 529 66.5
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 4.0e-200 701.8 527 65.7
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 5.3e-200 701.4 536 66.4
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 6.9e-200 701.0 528 65.9
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.2e-199 700.3 538 65.2
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 2.0e-199 699.5 527 67.7
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 2.6e-199 699.1 498 67.1
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 7.6e-199 697.6 535 65.4
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.3e-198 696.8 528 64.8
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 2.2e-198 696.0 521 66.6
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.9e-198 695.7 488 69.7
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 3.8e-198 695.3 488 69.5
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 3.8e-198 695.3 490 68.6
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.4e-197 693.3 498 67.5
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.4e-197 692.6 529 65.2
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 2.4e-197 692.6 504 67.5
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.6e-196 689.9 499 67.5
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 6.0e-196 688.0 528 64.6
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 3.9e-195 685.3 489 67.7
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.9e-195 685.3 509 67.2
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 6.7e-195 684.5 545 63.7
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.5e-194 683.3 489 67.5
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 6.2e-193 677.9 540 62.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.1e-192 677.2 485 66.6
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 1.4e-192 676.8 493 66.9
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.8e-192 676.4 492 67.1
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.9e-192 674.5 468 68.2
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.5e-191 673.3 540 63.1
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 9.9e-191 670.6 534 64.0
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.3e-190 670.2 505 64.8
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 2.2e-190 669.5 492 65.7
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 8.4e-190 667.5 477 66.0
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.1e-189 667.2 483 67.1
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.9e-189 666.4 492 66.5
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 1.8e-187 659.8 491 66.2
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 6.7e-187 657.9 534 63.1
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.9e-186 656.4 493 64.3
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 7.4e-186 654.4 503 63.4
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 9.6e-186 654.1 517 63.1
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 6.2e-185 651.4 517 61.9
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.8e-184 649.8 546 59.9
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 5.3e-184 648.3 500 64.2
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.2e-183 647.1 528 62.1
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.3e-182 643.7 528 61.6
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 2.9e-182 642.5 510 62.5
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 4.9e-182 641.7 525 61.3
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.9e-181 639.8 486 63.6
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.1e-179 631.7 532 60.3
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 3.3e-178 629.0 502 61.2
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.0e-175 619.8 492 62.6
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 2.6e-175 619.4 461 65.3
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 2.9e-174 615.9 524 59.4
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 3.2e-173 612.5 508 57.7
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 2.1e-172 609.8 476 63.9
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 2.3e-171 606.3 533 58.9
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 3.0e-171 605.9 442 67.6
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 3.2e-165 585.9 482 59.3
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 6.1e-164 581.6 541 56.9
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 5.7e-162 575.1 501 57.3
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 3.7e-161 572.4 447 62.0
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.2e-156 557.4 513 56.7
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 5.0e-142 508.8 502 50.4
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 1.7e-137 493.8 530 51.9
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 9.1e-136 488.0 499 47.7
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.5e-133 480.7 395 63.3
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 2.6e-130 469.9 363 65.0
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.5e-127 459.5 343 65.6
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 5.9e-127 458.8 474 46.8
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 3.8e-126 456.1 349 67.6
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.7e-121 440.7 370 61.9
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 8.3e-121 438.3 230 93.9
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 7.0e-120 435.3 417 54.0
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 4.3e-109 399.4 338 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.8e-108 396.7 426 46.2
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.1e-107 393.3 264 72.3
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 6.2e-100 369.0 296 65.2
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 3.4e-98 363.2 388 46.1
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 5.8e-90 335.9 270 63.3
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.1e-88 331.6 418 45.7
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 3.3e-85 320.1 272 57.7
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 5.6e-77 292.7 547 35.8
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 3.3e-69 266.9 241 56.8
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 5.3e-59 233.0 546 31.3
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.0e-53 214.5 127 71.7
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 8.5e-41 172.6 126 62.7
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.4e-38 165.2 90 86.7
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 8.8e-30 136.0 477 27.3
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.1e-27 129.0 87 70.1
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 3.2e-24 117.5 93 61.3
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 9.4e-24 115.9 380 25.3
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 2.0e-18 98.2 487 23.4
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.5e-16 91.3 78 62.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.5e-16 90.1 59 66.1
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 9.5e-16 89.4 102 46.1
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 3.6e-15 87.4 175 29.7
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 1.8e-14 85.1 73 58.9
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 9.2e-11 72.8 38 76.3
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.5e-10 70.5 76 51.3
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.0e-09 67.0 77 48.1
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 7.3e-08 63.2 37 70.3


User provided reference genes

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