Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 0.0e+00 1286.9 707 100.0
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 8.4e-307 1056.6 725 81.1
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.1e-293 1011.5 731 82.5
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 5.5e-290 1000.7 723 78.8
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 8.8e-288 993.4 723 81.1
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 2.6e-284 981.9 732 77.3
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 4.5e-284 981.1 729 78.1
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.0e-283 979.9 732 77.7
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.2e-252 876.7 603 80.8
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 5.9e-252 874.4 599 79.6
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 5.8e-199 698.4 740 65.9
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 7.1e-189 664.8 673 64.6
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.7e-156 556.6 670 54.3
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.4e-146 523.1 667 52.2
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 5.4e-120 436.0 665 49.5
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.0e-118 431.8 709 48.1
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.5e-117 427.9 681 48.6
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 7.8e-111 405.6 664 48.3
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 1.1e-109 401.7 622 49.7
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 3.6e-108 396.7 664 47.7
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 8.1e-108 395.6 680 47.4
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 6.0e-95 352.8 769 39.4
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 4.0e-91 340.1 748 40.2
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 3.2e-88 330.5 736 38.7
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.4e-88 329.7 676 40.1
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 7.1e-88 329.3 686 39.7
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 9.3e-88 328.9 686 39.7
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 9.3e-88 328.9 686 39.7
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-86 325.1 685 39.9
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.8e-86 324.7 759 39.7
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.3e-86 324.3 685 39.9
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.1e-85 322.0 677 39.0
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 9.6e-85 318.9 773 39.5
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.8e-83 314.7 754 37.4
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 2.6e-82 310.8 737 37.7
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 2.2e-81 307.8 735 38.1
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.4e-80 305.1 707 37.9
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.2e-79 302.0 770 37.5
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 7.9e-79 299.3 591 41.8
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-78 298.5 747 36.7
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 5.6e-77 293.1 782 34.9
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 7.4e-77 292.7 713 35.8
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 4.8e-76 290.0 723 37.3
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 9.0e-75 285.8 669 37.7
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 1.5e-74 285.0 705 37.0
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 6.5e-73 279.6 623 40.6
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 8.4e-73 279.3 723 35.7
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 2.7e-71 274.2 755 33.8
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 4.6e-71 273.5 713 35.8
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.1e-69 268.9 333 66.7
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.7e-68 263.8 701 33.4
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.4e-67 261.2 701 33.4
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 3.1e-67 260.8 663 35.9
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 5.3e-67 260.0 734 36.9
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.6e-66 257.7 697 35.6
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.5e-66 256.9 723 35.1
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 1.0e-65 255.8 762 34.0
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 1.7e-65 255.0 783 34.1
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.8e-65 253.8 701 33.1
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 8.5e-65 252.7 764 34.6
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.9e-64 251.5 681 35.2
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 2.5e-64 251.1 715 36.8
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 5.5e-64 250.0 710 34.8
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 3.6e-63 247.3 727 35.8
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 6.1e-63 246.5 662 35.2
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 5.1e-62 243.4 711 35.2
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 1.1e-61 242.3 717 35.8
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.0e-61 241.5 762 34.1
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 2.5e-61 241.1 739 34.5
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 7.4e-61 239.6 732 35.7
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.3e-60 238.8 641 34.8
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.8e-60 237.7 713 34.8
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.1e-59 235.7 664 37.3
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.4e-59 235.3 682 32.4
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 5.3e-59 233.4 688 33.7
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 9.1e-59 232.6 591 38.7
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.0e-58 231.5 706 35.1
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 1.0e-57 229.2 700 37.4
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 8.5e-57 226.1 709 33.3
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 8.5e-57 226.1 729 34.3
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 1.9e-56 224.9 691 34.4
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.0e-54 219.2 718 32.5
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.8e-54 218.4 711 31.9
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.0e-54 217.6 756 32.7
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 3.9e-54 217.2 679 34.0
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 6.7e-54 216.5 824 32.0
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 2.6e-53 214.5 736 32.3
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.6e-53 214.5 668 33.5
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 5.7e-53 213.4 731 32.8
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 9.7e-53 212.6 655 33.4
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.3e-52 212.2 756 32.0
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.1e-51 209.1 694 31.8
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.8e-51 208.4 687 33.9
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.8e-51 208.4 692 31.9
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 4.1e-51 207.2 759 30.2
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 5.3e-51 206.8 731 35.2
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 9.1e-51 206.1 697 32.9
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 2.9e-49 201.1 724 31.2
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 1.6e-47 195.3 684 31.6
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 2.7e-47 194.5 678 31.9
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 3.6e-47 194.1 711 33.1
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 6.1e-47 193.4 738 32.2
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 3.9e-46 190.7 666 31.2
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 5.2e-46 190.3 746 30.4
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 5.2e-46 190.3 697 32.4
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 7.4e-45 186.4 544 33.8
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 6.3e-44 183.3 687 29.4
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 8.2e-44 183.0 649 35.0
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 9.1e-43 179.5 647 31.4
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.0e-41 176.0 673 30.2
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 1.5e-40 172.2 615 35.1
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.9e-40 171.8 721 31.3
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.2e-40 171.0 610 31.3
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 5.5e-40 170.2 678 29.2
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 2.1e-39 168.3 735 29.5
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.4e-38 165.6 702 28.8
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 2.3e-38 164.9 712 31.7
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 5.2e-38 163.7 633 33.5
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 8.8e-38 162.9 641 29.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.3e-36 159.1 611 30.9
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.3e-36 159.1 666 30.2
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 2.8e-36 157.9 690 30.4
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 2.4e-35 154.8 476 36.8
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 2.4e-35 154.8 557 34.1
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 4.1e-35 154.1 619 30.7
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 5.3e-35 153.7 670 29.6
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.2e-34 152.5 696 29.6
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 2.7e-34 151.4 639 30.7
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 1.7e-33 148.7 683 29.7
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.4e-30 139.0 644 28.4
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 3.7e-28 131.0 465 34.6
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.8e-27 128.6 648 29.8
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.4e-27 128.3 654 27.5
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.1e-27 127.9 657 29.4
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 3.5e-26 124.4 292 34.6
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 1.3e-25 122.5 118 51.7
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 6.6e-25 120.2 673 27.2
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 1.6e-23 115.5 532 30.5
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 7.5e-21 106.7 260 38.1
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 4.9e-20 104.0 536 26.9
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 1.2e-18 99.4 215 34.0
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 2.7e-18 98.2 178 33.1
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 5.9e-18 97.1 429 27.5
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 1.7e-17 95.5 217 33.6
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 2.3e-17 95.1 386 30.3
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 2.9e-17 94.7 429 27.3
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.5e-16 92.4 438 27.6
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 5.6e-16 90.5 459 28.3
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 7.3e-16 90.1 470 29.1
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.2e-15 89.4 378 28.0
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 4.0e-14 84.3 171 44.4
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 4.4e-13 80.9 738 26.3
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 7.5e-13 80.1 464 27.4
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 1.3e-12 79.3 532 26.3
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 4.9e-12 77.4 458 29.3
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 2.4e-11 75.1 336 28.9
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 3.2e-11 74.7 170 26.5
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 4.1e-11 74.3 336 28.3
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 2.0e-10 72.0 110 40.0
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 1.0e-09 69.7 375 26.9
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.3e-09 69.3 184 32.1
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 1.3e-09 69.3 376 26.9
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 1.7e-09 68.9 174 29.3
Zm00001eb418620 Zea mays HOM05D003765 ORTHO05D004561 2.3e-09 68.6 134 33.6
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 5.0e-09 67.4 352 28.4
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 8.6e-09 66.6 356 27.5
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 1.1e-08 66.2 263 31.6
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 3.3e-08 64.7 177 27.1
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 7.3e-08 63.5 187 26.7
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 9.5e-08 63.2 179 27.4
A03p32820 Brassica napus HOM05D001693 ORTHO05D001588 1.2e-07 62.8 174 30.5
BraA03t12452Z Brassica rapa HOM05D001693 ORTHO05D001588 1.2e-07 62.8 174 30.5
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 2.8e-07 61.6 169 24.3
Potri.009G030700 Populus trichocarpa HOM05D002515 ORTHO05D002722 3.6e-07 61.2 207 27.5
Sabra09G0021700 Salix brachista HOM05D002515 ORTHO05D002722 3.6e-07 61.2 175 25.1
BcaC03g18556 Brassica carinata HOM05D001693 ORTHO05D001588 4.7e-07 60.8 187 28.3
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 8.0e-07 60.1 144 29.9
Mapoly0001s0174 Marchantia polymorpha HOM05D002515 ORTHO05D002722 5.2e-06 57.4 175 28.0
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 5.2e-06 57.4 115 42.6
BolC3t16259H Brassica oleracea HOM05D001693 ORTHO05D001588 6.8e-06 57.0 215 27.9
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 6.8e-06 57.0 115 41.7


User provided reference genes

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