Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 2158.3 1094 100.0
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1982.2 1095 91.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1982.2 1094 91.5
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1981.5 1099 91.4
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1973.7 1103 90.9
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1973.7 1103 90.9
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1973.4 1104 90.7
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1971.8 1094 90.6
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1955.3 1095 90.9
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1931.8 1094 89.5
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1924.4 1095 89.4
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1902.9 1088 89.3
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1901.7 1102 88.5
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1896.7 1090 89.0
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1886.3 1094 87.4
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1885.2 1109 86.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1832.8 1117 84.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1706.0 1109 77.4
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1378.6 1114 63.7
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1377.5 1112 63.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1371.7 1104 64.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1370.9 1114 64.0
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1364.4 1075 64.9
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1357.8 1112 63.2
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1356.3 1104 64.0
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1353.6 1096 63.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1352.0 1103 64.2
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1348.6 1096 63.6
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1342.8 1106 63.7
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1340.9 1111 62.0
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1339.7 1125 62.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1333.5 1110 62.9
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1332.0 1116 63.1
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1327.8 1173 58.9
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1320.8 1129 62.8
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1314.3 1055 64.3
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1311.6 1107 61.5
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1309.3 1116 60.8
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1300.4 1115 60.9
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1285.8 1097 60.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1283.9 1113 60.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1281.9 1098 60.8
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1281.2 1110 59.5
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1280.4 1118 59.9
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1280.4 1107 60.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1108 60.8
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1125 59.3
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1278.1 1117 59.8
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 1096 60.3
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 1077 60.9
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1276.2 1092 61.0
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1275.4 1095 60.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1275.0 1097 60.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1273.1 1094 60.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1271.5 1113 59.2
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1270.8 1172 58.2
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1109 58.8
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1094 60.0
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1116 58.7
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 1116 59.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1264.2 1112 59.2
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1262.3 1130 59.6
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1261.9 1121 58.7
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1260.0 1116 58.9
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1256.1 1118 58.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1133 59.4
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1249.2 1108 58.4
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1248.4 1116 58.7
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1245.0 1107 58.2
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 1096 58.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 1084 60.1
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1228.8 1081 59.3
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1228.8 1119 57.9
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1226.1 1104 57.6
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1225.7 1140 58.4
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1222.2 1114 58.4
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1220.7 1124 56.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1122 56.7
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1098 58.9
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1218.0 1117 56.8
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1210.7 1113 56.5
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1207.6 1105 57.0
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1206.8 1091 57.6
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1193.7 912 66.3
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1192.2 1101 57.2
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1192.2 1109 56.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1182.5 1126 55.5
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1180.2 1193 53.8
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1179.9 1103 56.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1165.2 1156 53.6
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1162.5 992 62.4
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1156.0 1098 55.1
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1152.1 953 63.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1144.4 991 61.5
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1136.3 1112 53.9
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1112.8 1186 51.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1109.4 943 62.0
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1104.7 950 60.9
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1097.4 1010 56.3
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1095.9 1155 51.9
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1087.4 837 65.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1080.1 1094 53.6
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 1.1e-310 1070.1 960 58.2
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.3e-310 1068.5 792 68.2
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.5e-299 1031.6 1095 51.9
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.6e-294 1015.8 735 68.6
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.0e-283 979.5 885 58.3
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.1e-280 969.5 1109 48.3
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.3e-266 923.7 1031 50.6
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.9e-265 919.8 1103 46.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.8e-255 886.7 639 69.5
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 4.6e-251 872.1 1000 47.6
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.1e-248 863.2 1131 45.2
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 4.1e-236 822.4 799 55.2
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.0e-234 817.8 1080 43.0
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 7.6e-222 775.0 815 50.6
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.0e-186 658.3 972 40.7
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 3.7e-168 596.7 1090 36.5
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 9.1e-151 538.9 400 67.5
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.9e-149 533.9 445 60.0
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.2e-147 528.5 1111 34.2
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.3e-140 503.8 537 52.1
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.2e-112 411.4 330 61.5
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 9.0e-106 389.4 323 59.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 4.6e-102 377.1 1191 27.0
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 8.7e-93 346.3 235 80.0
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.1e-92 345.9 235 79.6
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 7.6e-89 333.2 235 78.7
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 4.6e-78 297.4 514 37.4
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.7e-77 293.5 237 64.1
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.2e-62 246.1 384 41.4
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.7e-60 236.5 261 51.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.4e-58 231.9 259 51.4
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.7e-52 209.9 213 54.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.4e-50 206.1 365 38.1
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.1e-50 204.9 227 50.7
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.2e-46 193.0 230 49.6
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.2e-41 176.4 437 31.4
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.9e-41 174.1 188 52.1
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.9e-41 174.1 188 52.1
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.9e-41 174.1 188 52.1
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.2e-40 172.2 188 51.6
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.0e-40 171.0 188 51.6
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.1e-38 165.6 273 39.6
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.9e-32 145.2 161 49.1
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.1e-31 143.3 143 53.1
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 2.5e-31 142.1 352 30.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.7e-30 137.9 188 45.7
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.6e-22 112.8 97 62.9
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 7.5e-20 104.0 300 29.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.3e-19 100.5 240 30.4
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.9e-18 99.4 126 45.2
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.3e-16 92.4 76 60.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.0e-16 92.0 79 55.7
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 5.0e-16 91.3 58 65.5
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 9.8e-12 77.0 99 44.4
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.9e-10 72.8 72 51.4


User provided reference genes

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