Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 5.9e-61 237.3 114 100.0
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.0e-57 224.9 115 94.8
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 3.7e-55 218.0 115 91.3
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 1.1e-54 216.5 115 91.3
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 1.1e-54 216.5 115 91.3
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 3.2e-54 214.9 115 90.4
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 7.0e-54 213.8 115 90.4
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 7.8e-53 210.3 115 88.7
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.7e-52 209.1 114 89.5
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.5e-48 196.1 103 91.3
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.4e-46 187.6 114 78.1
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 2.7e-45 185.3 99 89.9
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 2.8e-42 175.3 119 75.6
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.3e-28 129.8 82 76.8
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.3e-28 129.0 113 60.2
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 6.6e-28 127.5 108 56.5
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 8.6e-28 127.1 111 59.5
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 8.6e-28 127.1 111 59.5
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 8.6e-28 127.1 111 59.5
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 1.9e-27 125.9 111 58.6
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 1.9e-27 125.9 112 59.8
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.9e-27 125.9 120 59.2
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 2.5e-27 125.6 118 59.3
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 2.5e-27 125.6 118 59.3
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 2.5e-27 125.6 111 58.6
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 2.5e-27 125.6 111 58.6
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.3e-27 125.2 112 57.1
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 7.3e-27 124.0 109 56.9
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 9.6e-27 123.6 112 57.1
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 9.6e-27 123.6 112 57.1
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 9.6e-27 123.6 112 57.1
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 9.6e-27 123.6 112 57.1
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 9.6e-27 123.6 112 57.1
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 9.6e-27 123.6 118 60.2
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.2e-26 123.2 120 58.3
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.6e-26 122.9 128 53.9
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 2.1e-26 122.5 113 60.2
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 2.8e-26 122.1 118 56.8
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 3.6e-26 121.7 110 57.3
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.2e-26 120.9 113 55.8
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.2e-26 120.9 113 55.8
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.1e-25 120.2 109 56.0
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.1e-25 120.2 124 54.0
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 1.4e-25 119.8 126 53.2
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 1.4e-25 119.8 119 51.3
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.8e-25 119.4 106 61.3
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.8e-25 119.4 120 53.3
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 2.4e-25 119.0 125 52.0
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 3.1e-25 118.6 113 56.6
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 3.1e-25 118.6 120 49.2
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 3.1e-25 118.6 121 52.1
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 3.1e-25 118.6 121 52.1
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 5.2e-25 117.9 122 53.3
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 5.2e-25 117.9 126 50.8
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 6.9e-25 117.5 116 55.2
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 6.9e-25 117.5 116 54.3
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 8.9e-25 117.1 117 56.4
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.2e-24 116.7 127 50.4
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.2e-24 116.7 126 51.6
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 1.5e-24 116.3 123 50.4
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 2.0e-24 115.9 131 48.1
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 2.0e-24 115.9 120 52.5
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 2.6e-24 115.5 113 55.8
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 3.4e-24 115.2 125 52.8
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 7.6e-24 114.0 123 50.4
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 7.6e-24 114.0 126 52.4
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 7.6e-24 114.0 123 53.7
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 9.9e-24 113.6 117 53.8
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 9.9e-24 113.6 121 52.1
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.7e-23 112.8 121 52.9
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 1.7e-23 112.8 128 46.1
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 1.7e-23 112.8 121 52.1
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 1.7e-23 112.8 115 54.8
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 2.2e-23 112.5 128 46.9
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 2.2e-23 112.5 130 50.0
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 2.9e-23 112.1 121 53.7
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 3.8e-23 111.7 124 50.8
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 3.8e-23 111.7 132 47.7
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 4.9e-23 111.3 119 53.8
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 4.9e-23 111.3 122 50.8
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 4.9e-23 111.3 121 53.7
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 6.4e-23 110.9 129 50.4
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.4e-23 110.9 114 54.4
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.4e-23 110.9 114 54.4
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 6.4e-23 110.9 127 49.6
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 6.4e-23 110.9 112 51.8
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 6.4e-23 110.9 122 53.3
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 8.4e-23 110.5 128 49.2
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 8.4e-23 110.5 137 45.3
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 1.1e-22 110.2 122 52.5
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.1e-22 110.2 124 51.6
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.9e-22 109.4 120 47.5
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 1.9e-22 109.4 118 53.4
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 1.9e-22 109.4 123 51.2
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.9e-22 109.4 117 50.4
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 2.4e-22 109.0 97 56.7
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.4e-22 109.0 107 53.3
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.4e-22 109.0 110 52.7
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 4.2e-22 108.2 125 47.2
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.2e-22 108.2 112 50.9
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 4.2e-22 108.2 122 51.6
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 4.2e-22 108.2 120 48.3
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 5.4e-22 107.8 126 50.0
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 7.1e-22 107.5 121 51.2
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 9.3e-22 107.1 121 48.8
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 9.3e-22 107.1 122 49.2
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 9.3e-22 107.1 113 54.9
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 1.2e-21 106.7 118 50.0
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.6e-21 106.3 115 48.7
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.6e-21 106.3 115 48.7
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 1.6e-21 106.3 123 46.3
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 1.6e-21 106.3 125 49.6
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 2.1e-21 105.9 123 48.0
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 4.6e-21 104.8 129 48.8
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 4.6e-21 104.8 121 47.1
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 4.6e-21 104.8 121 51.2
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 4.6e-21 104.8 127 47.2
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 7.8e-21 104.0 111 52.3
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 7.8e-21 104.0 123 48.8
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 7.8e-21 104.0 114 49.1
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.8e-21 104.0 114 49.1
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.0e-20 103.6 124 46.0
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.0e-20 103.6 126 49.2
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.0e-20 103.6 114 49.1
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.0e-20 103.6 124 47.6
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.3e-20 103.2 124 47.6
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 2.3e-20 102.4 121 47.9
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.3e-20 102.4 116 48.3
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 2.3e-20 102.4 121 48.8
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 2.3e-20 102.4 111 49.5
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.0e-20 102.1 122 48.4
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 3.9e-20 101.7 120 50.0
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 6.6e-20 100.9 125 44.8
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 6.6e-20 100.9 128 43.8
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 8.7e-20 100.5 128 46.9
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 8.7e-20 100.5 113 47.8
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 8.7e-20 100.5 122 49.2
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.1e-19 100.1 120 43.3
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.1e-19 100.1 103 52.4
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 1.9e-19 99.4 110 50.0
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 1.9e-19 99.4 110 50.0
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 3.3e-19 98.6 67 67.2
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 9.6e-19 97.1 112 50.9
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 9.6e-19 97.1 101 57.4
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 9.6e-19 97.1 127 46.5
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 9.6e-19 97.1 140 43.6
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 1.6e-18 96.3 126 44.4
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 2.1e-18 95.9 129 45.0
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 2.1e-18 95.9 109 50.5
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 2.8e-18 95.5 114 50.0
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 3.6e-18 95.1 121 43.8
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 3.6e-18 95.1 123 46.3
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 3.6e-18 95.1 104 52.9
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 4.8e-18 94.7 111 50.5
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 6.2e-18 94.4 121 44.6
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 6.2e-18 94.4 121 44.6
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 6.2e-18 94.4 121 44.6
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 8.1e-18 94.0 131 45.0
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 1.8e-17 92.8 126 41.3
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 1.8e-17 92.8 117 42.7
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 1.8e-17 92.8 117 47.9
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 2.4e-17 92.4 112 50.0
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 5.3e-17 91.3 111 43.2
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 6.9e-17 90.9 110 50.0
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 2.6e-16 89.0 114 47.4
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 3.4e-16 88.6 121 41.3
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 4.5e-16 88.2 112 47.3
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 1.7e-15 86.3 114 50.9
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 2.2e-15 85.9 109 45.0
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 3.2e-14 82.0 150 36.0
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 3.2e-14 82.0 99 50.5
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.0e-12 77.0 119 40.3
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.3e-12 76.6 162 35.2
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.8e-12 76.3 152 36.2
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 8.7e-12 73.9 95 45.3
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 8.7e-12 73.9 112 37.5
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 1.5e-11 73.2 145 33.8
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 3.6e-10 68.6 89 47.2
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 7.6e-08 60.8 156 31.4
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 4.2e-06 55.1 63 46.0
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 4.2e-06 55.1 124 33.1
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 7.1e-06 54.3 163 29.4
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 9.3e-06 53.9 126 34.1


User provided reference genes

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