Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.4e-126 455.3 277 100.0
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-40 171.0 275 42.5
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.4e-39 167.5 275 42.2
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.4e-39 167.5 275 42.2
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 9.7e-33 144.8 153 47.7
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 2.2e-32 143.7 149 50.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.6e-30 137.5 152 46.7
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 2.0e-30 137.1 151 47.0
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 1.7e-29 134.0 151 46.4
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-29 133.7 152 48.0
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 2.2e-29 133.7 152 48.0
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.2e-28 129.8 152 44.7
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.6e-27 127.5 150 46.0
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 4.7e-27 125.9 150 44.0
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 4.7e-27 125.9 150 44.0
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-26 124.0 150 43.3
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.8e-26 124.0 155 45.2
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 3.0e-26 123.2 150 43.3
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-24 117.9 147 44.2
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.8e-24 116.7 112 53.6
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 7.0e-23 112.1 151 42.4
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 7.7e-22 108.6 152 40.8
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 7.7e-22 108.6 152 40.8
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 7.7e-22 108.6 152 40.8
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 7.7e-22 108.6 152 40.8
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.3e-21 107.8 150 41.3
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.5e-21 105.5 150 40.7
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.1e-20 104.8 152 40.1
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-19 100.9 160 39.4
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-19 100.1 153 39.2
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.0e-18 98.2 152 36.8
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.8e-18 97.4 152 40.1
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.3e-18 97.1 152 40.1
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.0e-18 96.3 160 37.5
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.0e-18 96.3 156 39.1
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 8.8e-18 95.1 150 38.7
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-17 94.7 156 35.9
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-16 90.1 146 39.0
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.9e-16 89.4 157 38.2
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-15 87.8 156 37.2
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 1.4e-15 87.8 149 40.3
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 3.1e-15 86.7 116 42.2
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 4.1e-15 86.3 116 42.2
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 9.2e-15 85.1 122 44.3
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-14 84.3 156 35.9
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.0e-14 84.0 106 39.6
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.0e-14 84.0 106 39.6
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-14 83.6 157 35.7
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 2.7e-14 83.6 121 35.5
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-14 83.6 121 35.5
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-14 83.6 121 35.5
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 3.5e-14 83.2 106 39.6
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 7.7e-14 82.0 147 37.4
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 7.7e-14 82.0 106 38.7
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.3e-13 81.3 106 38.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-13 80.5 149 34.2
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.0e-13 79.3 158 34.8
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 5.0e-13 79.3 122 35.2
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 8.6e-13 78.6 154 33.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 8.6e-13 78.6 124 33.9
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.1e-12 78.2 122 35.2
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.5e-12 77.8 124 33.1
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.5e-12 77.8 145 31.0
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-12 77.8 105 38.1
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.9e-12 77.4 126 38.1
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 2.5e-12 77.0 150 36.0
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 2.5e-12 77.0 150 36.0
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.5e-12 77.0 122 33.6
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 2.5e-12 77.0 112 33.0
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 3.3e-12 76.6 156 33.3
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 3.3e-12 76.6 156 33.3
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 4.3e-12 76.3 121 35.5
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 4.3e-12 76.3 113 38.1
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 5.6e-12 75.9 152 33.6
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 5.6e-12 75.9 152 33.6
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.3e-12 75.5 122 32.8
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 7.3e-12 75.5 120 34.2
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 7.3e-12 75.5 122 33.6
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 7.3e-12 75.5 110 36.4
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 1.2e-11 74.7 152 36.2
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.2e-11 74.7 111 38.7
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.6e-11 74.3 122 34.4
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.6e-11 74.3 109 35.8
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 2.1e-11 73.9 150 36.0
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 2.1e-11 73.9 150 36.0
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 2.1e-11 73.9 122 32.0
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 2.8e-11 73.6 119 32.8
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.8e-11 73.6 122 32.8
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 2.8e-11 73.6 121 33.9
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.8e-11 73.6 116 37.9
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 3.6e-11 73.2 154 35.1
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 8.0e-11 72.0 116 35.3
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.0e-10 71.6 154 32.5
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.0e-10 71.6 153 34.6
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.0e-10 71.6 153 34.6
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 1.0e-10 71.6 122 31.1
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.0e-10 71.6 110 34.5
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-10 71.2 110 36.4
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.8e-10 70.9 123 30.9
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.3e-10 70.5 113 34.5
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 3.0e-10 70.1 118 33.9
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 3.0e-10 70.1 122 34.4
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 4.0e-10 69.7 114 36.0
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 4.0e-10 69.7 116 36.2
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 4.0e-10 69.7 116 36.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 4.0e-10 69.7 110 36.4
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 5.2e-10 69.3 156 33.3
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 5.2e-10 69.3 156 33.3
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 5.2e-10 69.3 121 30.6
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.2e-10 69.3 121 30.6
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 5.2e-10 69.3 121 30.6
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 5.2e-10 69.3 109 33.9
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.9e-10 68.6 121 30.6
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 8.9e-10 68.6 123 29.3
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.2e-09 68.2 123 29.3
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-09 67.8 105 38.1
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 2.0e-09 67.4 122 33.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.6e-09 67.0 118 30.5
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 5.7e-09 65.9 122 31.1
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 7.5e-09 65.5 117 30.8
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.5e-09 65.5 117 31.6
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 7.5e-09 65.5 117 31.6
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 9.8e-09 65.1 114 35.1
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 9.8e-09 65.1 112 33.9
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.3e-08 64.7 118 32.2
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 1.7e-08 64.3 139 29.5
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.2e-08 63.9 124 32.3
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-08 63.5 115 38.3
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 3.7e-08 63.2 107 35.5
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 3.7e-08 63.2 112 33.9
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 6.4e-08 62.4 119 31.1
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 8.3e-08 62.0 116 33.6
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-07 61.2 116 30.2
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.8e-07 60.8 118 32.2
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-07 60.5 114 35.1
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 2.4e-07 60.5 117 29.9
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.4e-07 60.5 116 31.9
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 3.2e-07 60.1 111 34.2
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.2e-06 58.2 67 37.3
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 1.6e-06 57.8 99 28.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 2.7e-06 57.0 119 29.4
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.7e-06 57.0 106 34.9
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 3.5e-06 56.6 118 28.8
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 3.5e-06 56.6 108 31.5
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 5.9e-06 55.8 116 27.6
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 5.9e-06 55.8 116 27.6
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 7.8e-06 55.5 117 30.8


User provided reference genes

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