Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 1.0e-61 240.0 127 100.0
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 1.9e-55 219.2 129 94.6
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 5.2e-50 201.1 130 86.2
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 5.2e-50 201.1 130 86.2
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 6.9e-50 200.7 128 80.5
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 6.9e-50 200.7 117 87.2
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 1.5e-49 199.5 130 85.4
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 1.5e-49 199.5 116 87.1
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 2.6e-49 198.7 130 80.8
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 7.6e-49 197.2 130 78.5
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 1.1e-47 193.4 129 76.7
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 1.2e-46 189.9 130 83.8
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 1.2e-46 189.9 130 83.8
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 4.0e-34 148.3 112 67.9
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.3e-27 126.7 114 57.0
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.3e-27 126.7 115 56.5
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 6.2e-27 124.4 110 56.4
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 1.1e-26 123.6 114 54.4
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 1.1e-26 123.6 113 54.0
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 1.4e-26 123.2 116 55.2
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 1.4e-26 123.2 110 56.4
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 2.4e-26 122.5 117 53.0
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 9.0e-26 120.6 110 55.5
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.2e-25 120.2 117 52.1
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.5e-25 119.8 110 55.5
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 2.6e-25 119.0 107 53.3
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 3.4e-25 118.6 115 52.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 4.5e-25 118.2 107 55.1
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 4.5e-25 118.2 114 53.5
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 4.5e-25 118.2 113 53.1
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 5.8e-25 117.9 114 52.6
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 5.8e-25 117.9 114 52.6
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 2.2e-24 115.9 110 51.8
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 2.9e-24 115.5 113 50.4
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 2.9e-24 115.5 102 54.9
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 2.9e-24 115.5 116 50.9
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.9e-24 115.5 114 52.6
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 2.9e-24 115.5 118 49.2
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 2.9e-24 115.5 118 50.0
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 2.9e-24 115.5 113 54.0
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 3.8e-24 115.2 116 53.4
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 4.9e-24 114.8 118 49.2
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 4.9e-24 114.8 112 54.5
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 4.9e-24 114.8 107 52.3
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 4.9e-24 114.8 111 51.4
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 4.9e-24 114.8 108 50.9
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 6.5e-24 114.4 112 54.5
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 6.5e-24 114.4 115 50.4
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 8.4e-24 114.0 106 53.8
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 1.1e-23 113.6 110 50.0
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 1.4e-23 113.2 109 52.3
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 1.4e-23 113.2 117 48.7
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.9e-23 112.8 115 49.6
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 1.9e-23 112.8 110 50.0
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 1.9e-23 112.8 110 50.0
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.9e-23 112.8 108 54.6
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.9e-23 112.8 108 54.6
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 4.2e-23 111.7 110 49.1
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 7.1e-23 110.9 106 50.9
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 9.3e-23 110.5 121 47.9
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 1.2e-22 110.2 123 48.0
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 1.2e-22 110.2 110 50.0
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.6e-22 109.8 113 50.4
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 6.0e-22 107.8 111 53.2
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 1.0e-21 107.1 121 47.9
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 1.3e-21 106.7 115 47.0
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 1.3e-21 106.7 121 47.1
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 3.9e-21 105.1 109 52.3
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 3.9e-21 105.1 114 50.9
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 3.9e-21 105.1 104 47.1
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 8.7e-21 104.0 116 46.6
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 8.7e-21 104.0 119 47.1
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 1.1e-20 103.6 98 48.0
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 1.1e-20 103.6 115 45.2
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 5.7e-20 101.3 106 47.2
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 5.7e-20 101.3 109 49.5
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 3.7e-19 98.6 86 55.8
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 6.9e-18 94.4 110 46.4
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 4.5e-17 91.7 110 44.5
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 3.8e-16 88.6 104 47.1
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 5.0e-16 88.2 112 42.9
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 3.6e-14 82.0 130 40.0
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 4.2e-07 58.5 113 36.3
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 7.2e-07 57.8 59 44.1
Potri.005G100600 Populus trichocarpa HOM05D007916 ORTHO05D010074 1.6e-06 56.6 112 33.0
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 4.7e-06 55.1 89 36.0
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 4.7e-06 55.1 89 36.0


User provided reference genes

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