Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 8.0e-76 287.0 140 100.0
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.8e-59 232.6 124 91.1
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.8e-59 232.6 124 91.1
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.8e-59 232.6 124 91.1
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.8e-59 232.6 124 91.1
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 2.3e-59 232.3 124 90.3
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 2.3e-59 232.3 124 90.3
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 2.3e-59 232.3 124 90.3
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 9.3e-40 167.2 124 71.8
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 9.3e-40 167.2 124 71.8
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 9.6e-37 157.1 127 58.3
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 4.0e-35 151.8 124 66.9
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 9.0e-35 150.6 127 56.7
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-33 146.4 127 55.1
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 3.8e-33 145.2 127 53.5
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 3.8e-33 145.2 116 58.6
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 3.8e-33 145.2 124 55.6
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-33 144.8 124 55.6
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-33 144.8 124 55.6
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-32 143.7 125 56.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.3e-32 140.6 124 53.2
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.3e-32 140.6 124 53.2
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.3e-32 140.6 124 53.2
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.3e-32 140.6 124 53.2
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 9.3e-32 140.6 124 53.2
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 9.3e-32 140.6 124 53.2
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.6e-31 139.8 116 56.0
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.6e-31 139.8 116 56.0
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-31 139.4 106 59.4
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-31 139.4 110 59.1
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-30 137.1 124 52.4
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.3e-30 136.0 124 54.8
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 5.1e-30 134.8 115 58.3
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 9.6e-29 130.6 127 49.6
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.1e-27 125.6 134 50.0
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 2.2e-25 119.4 137 48.9
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 6.4e-25 117.9 86 62.8
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-24 115.9 100 56.0
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-24 115.5 126 47.6
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-24 114.4 126 47.6
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-24 114.4 126 47.6
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-24 114.4 126 47.6
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 9.3e-24 114.0 151 43.0
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-23 113.6 115 51.3
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-23 112.8 109 52.3
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.1e-23 112.8 126 49.2
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.6e-23 111.7 117 48.7
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.3e-22 110.2 79 64.6
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.8e-22 109.8 123 42.3
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 3.9e-22 108.6 115 53.0
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.9e-22 108.6 75 64.0
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 3.9e-22 108.6 75 64.0
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 3.9e-22 108.6 119 46.2
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 78 57.7
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 8.1e-20 100.9 115 45.2
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.1e-19 100.5 126 41.3
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 1.8e-19 99.8 84 54.8
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 2.4e-19 99.4 106 49.1
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 3.4e-18 95.5 115 44.3
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.4e-18 95.5 63 66.7
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 5.8e-18 94.7 78 53.8
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 5.8e-18 94.7 111 46.8
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 7.6e-18 94.4 119 44.5
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 4.9e-17 91.7 126 42.1
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.4e-17 90.9 120 43.3
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.9e-16 89.7 126 39.7
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.9e-16 89.7 126 39.7
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 4.2e-16 88.6 81 56.8
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 5.5e-16 88.2 113 44.2
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-15 87.0 74 52.7
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 4.6e-15 85.1 75 53.3
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 1.0e-14 84.0 72 58.3
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.8e-14 83.2 113 42.5
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 2.3e-14 82.8 104 44.2
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 5.7e-13 78.2 88 47.7
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 7.4e-13 77.8 74 54.1
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 9.6e-13 77.4 72 47.2
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.6e-13 77.4 102 45.1
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 1.3e-12 77.0 74 48.6
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.6e-12 76.6 61 54.1
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.8e-12 75.9 64 51.6
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.7e-12 75.5 72 51.4
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.1e-11 73.9 76 44.7
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.4e-11 73.6 114 38.6
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 1.4e-11 73.6 120 38.3
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.4e-11 73.6 61 54.1
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 9.0e-11 70.9 76 42.1
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.2e-10 70.5 116 36.2
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.2e-10 70.5 99 45.5
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 1.5e-10 70.1 68 47.1
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 2.6e-10 69.3 81 44.4
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.4e-10 68.9 73 45.2
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 5.9e-10 68.2 117 37.6
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 5.9e-10 68.2 117 37.6
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 1.3e-09 67.0 64 53.1
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 2.9e-09 65.9 100 40.0
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.0e-09 65.1 55 52.7
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-08 63.9 67 41.8
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 2.5e-08 62.8 72 43.1
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.3e-08 60.8 36 72.2
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 1.2e-07 60.5 59 55.9
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-07 59.7 123 30.9
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 4.6e-07 58.5 76 47.4
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 4.6e-07 58.5 27 96.3
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 1.0e-06 57.4 70 45.7
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.3e-06 57.0 49 51.0
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 1.3e-06 57.0 118 32.2
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.8e-06 56.6 85 35.3
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.8e-06 56.6 85 35.3
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.3e-06 56.2 49 51.0
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.0e-06 55.8 49 51.0
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 5.1e-06 55.1 46 54.3
Rhsim06G0107900 Rhododendron simsii HOM05D002660 ORTHO05D003902 6.7e-06 54.7 57 47.4
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 8.7e-06 54.3 56 46.4


User provided reference genes

Program Settings