Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10003089m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 9.9e-42 172.9 82 100.0
BraSC48t46294Z Brassica rapa HOM05D008299 ORTHO05D010400 6.6e-38 160.2 78 98.7
BraSC48t46311Z Brassica rapa HOM05D008299 ORTHO05D010400 6.6e-38 160.2 78 98.7
BraSC48t46344Z Brassica rapa HOM05D008299 ORTHO05D010400 6.6e-38 160.2 78 98.7
ATCG00870 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 2.8e-36 154.8 78 94.9
ATCG01270 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 2.8e-36 154.8 78 94.9
CARHR282310 Cardamine hirsuta HOM05D008299 ORTHO05D010400 2.8e-36 154.8 78 94.9
CARHR282550 Cardamine hirsuta HOM05D008299 ORTHO05D010400 2.8e-36 154.8 78 94.9
Thhalv10012154m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 2.8e-36 154.8 78 94.9
C06p23160 Brassica napus HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
C09p24750 Brassica napus HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BolSC29t60493H Brassica oleracea HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BolSC37t60783H Brassica oleracea HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BolSC44t60837H Brassica oleracea HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BolSC49t61213H Brassica oleracea HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BraSC103t45416Z Brassica rapa HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BraSC103t45438Z Brassica rapa HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BraSC143t45671Z Brassica rapa HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
BraSC25t45895Z Brassica rapa HOM05D008299 ORTHO05D010400 8.1e-36 153.3 78 94.9
AL9U12040 Arabidopsis lyrata HOM05D008299 ORTHO05D010400 6.4e-33 143.7 72 94.4
BolSC45t60893H Brassica oleracea HOM05D008299 ORTHO05D010400 5.4e-24 114.0 56 94.6
MD11G1013500 Malus domestica HOM05D008299 ORTHO05D010400 3.7e-20 101.3 62 80.6
BolC2t08923H Brassica oleracea HOM05D008299 ORTHO05D010400 6.9e-19 97.1 49 91.8
CSS0008439 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 3.4e-18 94.7 55 78.2
CSS0021182 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 3.4e-18 94.7 55 78.2
BraSC54t46357Z Brassica rapa HOM05D008299 ORTHO05D010400 4.9e-17 90.9 44 95.5
Gohir.1Z050502 Gossypium hirsutum HOM05D008299 ORTHO05D010400 4.9e-17 90.9 44 95.5
Gohir.D02G117444 Gossypium hirsutum HOM05D008299 ORTHO05D010400 4.9e-17 90.9 44 95.5
CAN.G1298.15 Capsicum annuum HOM05D008299 ORTHO05D010400 6.5e-17 90.5 54 75.9
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 6.5e-17 90.5 54 75.9
BraSC138t45545Z Brassica rapa HOM05D008299 ORTHO05D010400 5.5e-16 87.4 46 87.0
CAN.G100.36 Capsicum annuum HOM05D008299 ORTHO05D010400 5.5e-16 87.4 54 74.1
BraSC59t46562Z Brassica rapa HOM05D008299 ORTHO05D010400 1.2e-15 86.3 46 87.0
Solyc11g021080.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.2e-15 86.3 54 72.2
BraSC58t46447Z Brassica rapa HOM05D008299 ORTHO05D010400 1.6e-15 85.9 43 93.0
CAN.G1648.16 Capsicum annuum HOM05D008299 ORTHO05D010400 1.6e-15 85.9 54 72.2
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 1.6e-15 85.9 54 72.2
CAN.G129.17 Capsicum annuum HOM05D008299 ORTHO05D010400 4.6e-15 84.3 64 65.6
BolSC29t60562H Brassica oleracea HOM05D008299 ORTHO05D010400 1.8e-14 82.4 41 92.7
CAN.G1178.2 Capsicum annuum HOM05D008299 ORTHO05D010400 1.8e-14 82.4 38 92.1
CAN.G719.1 Capsicum annuum HOM05D008299 ORTHO05D010400 6.7e-14 80.5 45 77.8
Solyc01g017080.2 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.5e-13 79.3 54 66.7
Solyc02g011920.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-12 75.5 52 67.3
SGA_v2.0_scaffold379G50347 Striga asiatica HOM05D008299 ORTHO05D010400 3.1e-11 71.6 60 60.0
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 7.9e-07 57.0 24 100.0
Potri.013G000766 Populus trichocarpa HOM05D008299 ORTHO05D010400 3.9e-06 54.7 44 63.6


User provided reference genes

Program Settings